Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq626 104 4e-17 >seq626 Length=20921866 Score = 104 bits (114), Expect = 4e-17 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 |||||| || ||||| |||| || || ||||| ||| | | | || |||||||| || Sbjct 6571240 CTTGTCGACGGTGAATTGAACAGCATTGACGGCTGGCTTCGTACGCAAGTAGTACATTCC 6571299 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG-- 203956 ||||| || ||||||| ||| ||||| | |||||| || | | | | ||| | Sbjct 6571300 AGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGATGTGA---TACCGGCGTAGCT 6571356 Query 203957 -GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 || | |||||| || ||||| || || || ||| |||||||| | | ||||| || Sbjct 6571357 CGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGATGAATGCACCACGATCAGC 6571416 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGT 204057 ||||| | ||| || |||||| || ||||||||||| || Sbjct 6571417 AGCCATCTCGATGATCTCCTTCTGTGATATCTCCCACACAGT 6571458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148590272400