Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq542 138 3e-27 seq549 134 3e-26 seq625 129 1e-24 >seq542 Length=114868 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| |||||||| |||| |||||||||| | ||| ||||||||| Sbjct 77428 AGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCT 77487 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | ||||||||| || |||||||| || Sbjct 77488 TCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 77547 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || ||||| ||| || | | || || |||| ||||| || Sbjct 77548 TGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTT 77607 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| || || ||||| Sbjct 77608 TTTCCAGTCAACGTTTTGACGAAGATTTG 77636 Score = 127 bits (140), Expect = 5e-24 Identities = 155/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTT-GGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || || | ||| ||||| || ||||||| ||| ||||||||| | |||||| | ||||| Sbjct 76925 AGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATC 76984 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 || |||||||||||||||||||| | | ||||| || || |||||||| || Sbjct 76985 CTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTC 77044 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||||||| ||| ||| || | |||||| | | || || ||||| |||||||| Sbjct 77045 TTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAATGTGATCGT 77104 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || ||||| ||||| || || Sbjct 77105 CTTTCCGGTCAGGGTTTTGACAAAGATCTG 77134 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| |||||||| |||| |||||||||| | ||| ||||| || Sbjct 76697 AGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCC 76756 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| || | ||||||||| || ||||| || || Sbjct 76757 TCAAGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 76816 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||| || | | ||| || || | ||||| ||| Sbjct 76817 TGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATGGTC 76876 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 76877 TTTCCTGTGAGGGTCTTGACGAAGATCTG 76905 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||||||||| |||| ||||||||| | | || | |||||| Sbjct 76469 AGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCC 76528 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| | | ||||| || || |||||||| || Sbjct 76529 TCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCT 76588 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | ||| || || | || || ||| Sbjct 76589 TGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTC 76648 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| || || || || Sbjct 76649 TTTCCTGTGAGTGTTTTGACGAAGATCTG 76677 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||||||||| |||| ||||||||| | | || | ||||| Sbjct 75961 AGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGACCATCC 76020 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| | ||| || || || || ||||| || || Sbjct 76021 TCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCT 76080 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || ||||| ||||| ||| Sbjct 76081 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAAGGTGATGGTC 76140 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || || || || Sbjct 76141 TTTCCAGTCAAAGTCTTGACGAAGATCTG 76169 >seq549 Length=112515 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| || ||||||||||||| ||||||||| | |||||| | ||||| Sbjct 111912 AGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCC 111971 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| | ||| ||||| || || ||||| ||| || Sbjct 111972 TCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGTCT 112031 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | ||| || || | ||||| ||| Sbjct 112032 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGGTC 112091 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || || || Sbjct 112092 TTTCCAGTGAGAGTCTTGACGAAGATCTG 112120 Score = 109 bits (120), Expect = 1e-18 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||| || |||||| ||| |||||| || | |||||| | ||||| Sbjct 112140 AGAACCAAGTGGAGAGTGGATTCCTTT-GGATGTTGTAATCCGACAAAGTGCGACCATCC 112198 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| | | ||||| | | | |||||| || | || Sbjct 112199 TCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGAT-CTGTGGGATTCCTCCTTG-TCT 112256 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| || | |||||| | | || || ||||| ||||| ||| Sbjct 112257 TGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTC 112316 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | |||||| || || || || Sbjct 112317 TTTCCAGTCAAAGTTTTGACGAAGATCTG 112345 >seq625 Length=33334924 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||||||||||||||||| ||||||||| | | ||| | |||||| Sbjct 31079071 AGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCC 31079012 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| || | ||||| || || ||||||||| || Sbjct 31079011 TCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCT 31078952 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | | || || || | || || ||| Sbjct 31078951 TGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTC 31078892 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| || || || ||||| Sbjct 31078891 TTACCCGTCAGAGTCTTGACGAAGATTTG 31078863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178911555219555