Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq542 113 5e-20 seq549 105 8e-18 seq625 98.7 1e-15 >seq542 Length=114868 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || ||||| | | || ||||||||||| |||||||| Sbjct 77448 CTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCGAGCTGCTTTCCGGCGAA 77507 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | |||||||| |||||| ||||| | Sbjct 77508 GATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 77567 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || | ||||| |||| ||||||||||| || |||| |||||| || Sbjct 77568 TTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGAC 77627 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 77628 GAAGATTTGCAT 77639 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | |||| || | || |||||| ||||| ||||||||||| Sbjct 75946 CCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 76005 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || || ||||| |||||||| ||||| || || || || | || Sbjct 76006 AGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 76065 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| || | | |||||| | || || Sbjct 76066 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACT 76125 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || |||| || || || ||||| ||||| Sbjct 76126 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTT-GGATATTGTAGTCGGA 46425 |||||||| | ||| | |||| || | || ||||||| |||| ||||||||||| Sbjct 76910 CCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGA 76969 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 | |||||| | || || |||||||| |||||||| ||||| | ||||| || | || Sbjct 76970 CAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGG 77029 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | |||||||| ||||| ||||| || | | |||||| | || || Sbjct 77030 GATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGAC 77089 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| || || || ||||| ||||| |||||||| |||||| Sbjct 77090 TTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCATT 77138 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || ||||| | |||| || |||||||| |||||||| Sbjct 76717 CTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAA 76776 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 76777 GATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 76836 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||| || || | |||||||| || || || || || || || Sbjct 76837 CTCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGAC 76896 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 76897 GAAGATCTGCATT 76909 >seq549 Length=112515 Score = 105 bits (116), Expect = 8e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| | |||||| | || ||||| ||||| |||||||| Sbjct 111932 CTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAA 111991 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || || || ||||| || | || | | ||| ||||| |||||| ||||| | Sbjct 111992 GATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTT 112051 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || || | |||||||| || || || || || || || Sbjct 112052 CTCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGAC 112111 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 112112 GAAGATCTGCATT 112124 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| || ||||| | |||| || |||||||| |||||||| Sbjct 112386 TCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAG 112445 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||| | |||||||| | || | | ||||||||| |||||| ||||| Sbjct 112446 ATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGA 112500 >seq625 Length=33334924 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| ||||| || | || ||||| ||||| |||||||| Sbjct 31079051 CTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 31078992 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||| || | || | | |||||||| |||||| ||||| | Sbjct 31078991 GATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATT 31078932 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || || | || || || || |||||||| || || || Sbjct 31078931 CTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGAC 31078872 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 31078871 GAAGATTTGCAT 31078860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233701455800