Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq626 132 5e-26 seq542 125 7e-24 seq625 114 1e-20 seq549 102 8e-17 >seq626 Length=20921866 Score = 132 bits (146), Expect = 5e-26 Identities = 231/334 (69%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 132949 GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA 133008 ||||| || ||||| || || || || |||||||| || || | |||||| || Sbjct 3165006 GTCAAACCCGGCATAAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCGCTG 3164947 Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG 133068 ||||||| ||||||||||| |||||||| | || || ||| |||||| |||| ||| Sbjct 3164946 AAGAAGATACCCTCGACGGCGGCGAAAGCGATGAGTCGTTCGGCGAACGACGCTTTCTTG 3164887 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCG-TTTC--- 133124 | |||||||| || ||||| |||||||| | |||| || ||| ||| Sbjct 3164886 TCTGAAATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGATAAAC----TCGAATTCGAA 3164831 Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGT 133184 ||||||||| || | | | | ||| | ||| | || || || ||||| | Sbjct 3164830 GATGGCGTTGAAAAGAGTGTGACGCTCCGTCTCATCACGGATATACGTCTCAATGAGCTT 3164771 Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244 ||| ||||| ||||| || | ||||| ||||||||||| || ||||| ||| | || || Sbjct 3164770 CGAGTACATCTCCGAATGAATATTCTCGATGGCGATTTGGAATCCGTAGAAGAAACGGGC 3164711 Query 133245 CTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 ||| ||||| |||||| | | ||| || ||| Sbjct 3164710 CTCCGACACCTTCACTTCATTCGAGAAGCGTTCG 3164677 >seq542 Length=114868 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || |||||||| || Sbjct 76172 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCC 76113 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||| || | || || Sbjct 76112 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCA 76054 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || || || || || | || ||||| ||||||||| Sbjct 76053 ACAACGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAA 75994 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || || ||||| || ||||||||||| || Sbjct 75993 CATCCAGAAGGAGTCGACTCTTCACTTGGTTCTCCGTTTGAGAGGAGG 75946 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| |||||| | || || |||||||||||| | || || ||||| | Sbjct 77639 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCT 77580 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | || |||| ||||| || ||||| || | ||||| Sbjct 77579 GATACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 77520 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | ||||| | ||| || || ||||| || || | | || ||| |||||||| Sbjct 77519 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAAGATGGAAGAACTCTCTCTGACTACAAT 77460 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || ||| | || || ||| Sbjct 77459 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTTCGT 77424 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| ||||| || || ||||| || | || ||||| ||| | Sbjct 76681 AATGCAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTC 76622 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || |||| ||||| || ||||| || | || | Sbjct 76621 TGACACTATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATC 76563 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | | || | ||| || || || || || || | || |||||| ||||||| Sbjct 76562 AGCAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACCCTCTCGGACTACA 76503 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||| || || ||||| || ||| | ||||| || Sbjct 76502 ACATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGTCTCAGAGGAGG 76454 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || || || || || ||||| | || |||||||| | Sbjct 77138 AATGCAGATCTTTGTCAAAACCCTGACCGGAAAGACGATCACATTGGAAGTCGAGGCTTC 77079 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || | || || | ||||| || ||||| || | || | Sbjct 77078 CGACACCATTGAGAACG-TCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATC 77020 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | | || | ||| || || ||||| || || | ||||| | |||||||| Sbjct 77019 AGCAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACA 76960 Query 38422 ACATCC-AAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||||| | || || || ||||| || ||| | ||||| || Sbjct 76959 ACATCCAAAAAGGAATCCACTCTTCACTTGGTTCTCCGTCTCAGAGGAGG 76910 >seq625 Length=33334924 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || || || ||| |||| ||||||||| || Sbjct 31078860 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 31078919 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || |||||||| | || || Sbjct 31078920 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 31078979 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || || | ||| || || || || || || | || || ||| |||||||||| Sbjct 31078980 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 31079039 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || || ||||| || ||| Sbjct 31079040 ATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGT 31079075 >seq549 Length=112515 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || || || ||| | Sbjct 112124 AATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAGCCTC 112065 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| |||||||||||||| || | || | Sbjct 112064 TGACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATC 112006 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | || | ||| || || || || || || | ||||| | |||||||| Sbjct 112005 AGCAACGTTTAATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACTTTGTCCGACTACA 111946 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || ||| | || || ||| Sbjct 111945 ACATCCAAAAGGAGTCAACCCTCCATCTCGTTCTTCGT 111908 Score = 82.4 bits (90), Expect = 8e-11 Identities = 158/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || || ||||||||| | || |||||||| | Sbjct 112348 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 112289 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| |||| | |||| | || || Sbjct 112288 GACACCATTGAGAACG-TCAAGGCCAAGATTCAAGACAAGGAGGAA--TCCCACAGATCA 112232 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | || | ||| || || ||||| || || | ||||| | || ||||| Sbjct 112231 GCAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGATTACAA 112172 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||||| | || || || ||||| || ||| | ||||| || Sbjct 112171 CATCC-AAAGGAATCCACTCTCCACTTGGTTCTCCGTCTCAGAGGAGG 112125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168642313600