Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq626 109 7e-19 seq625 96.9 4e-15 >seq626 Length=20921866 Score = 109 bits (120), Expect = 7e-19 Identities = 409/629 (65%), Gaps = 17/629 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||||| ||||| ||||| |||||||| || || || | ||| | ||| Sbjct 6579273 CCACAACAGATGTTGATGCGTGTCGCCATCGGTATTCACGGAGAGAACATTCAAGCTGCC 6579332 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| | |||||| | | || | | || || | ||||| ||||| Sbjct 6579333 ATCGAGACGTACAATCTGATGTCGGAGCGATACATG-ACGCATGCTTCCCCAACTCTCTT 6579391 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||| |||| ||| | || || ||||| || ||||| | ||| | ||||| Sbjct 6579392 CAACTCTGGAACATGTCGCCCACAGATGTCGTCGTGCTTCCTGCTCACAATGAGCGAGGA 6579451 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 ||| || || || |||| || | | | ||||| | ||||| ||| | || || Sbjct 6579452 TTCGATTCTCGGAATCTACGATACCTTGAAGCAGTGTGCTCTCATCTCGAAGAGTGCCGG 6579511 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAG-TCTCGTATTAGAGGTACAA 111909 || || || | || |||| | | | || | || | ||| ||| || || | Sbjct 6579512 AGGAATTGGACTCAACGTCCACAAGATTCGCGCTA-CAGGATCTGTCATTGCCGGAACCA 6579570 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 |||| || |||| | || || |||||||| || | ||| |||||| || |||| Sbjct 6579571 ATGGAACTTCCAATGGGCTCATCCCGATGCTTCGTGTCTACAACAACACAGCTCGTTATG 6579630 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | | || | || ||| | || ||| || |||| |||| ||||||||||||| Sbjct 6579631 TTGATCAGGGAGGAAACAAGCGCC-CA--GGAGCTTTCGCCATCTACCTTGAGCCATGGC 6579687 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| || | |||||| | | | || ||| ||| || |||| ||| | Sbjct 6579688 ACGCCGATGTCTTCGAGTTCGTCGCTCTTCGCAAGAACACCGGTCCAGAAGAGGAGCG-T 6579746 Query 112084 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 || || ||||| ||| ||||||||| | || || |||||||||||| | || ||| | Sbjct 6579747 GCTCGTGATCTGTTCCTGGCTCTCTGGGTGCCGGACCTCTTCATGAAGCGCGTCGAGAAA 6579806 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGG 112201 | ||||||| || | || ||| | || || || ||| ||| ||| | ||| Sbjct 6579807 GATCAGGATTGGTCGCTGATGTGCCCATGCGAGTGCCCAGGACTCGACGACTGCTG-GGG 6579865 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGT 112230 || ||||||||||| || || |||||| Sbjct 6579866 AGAAGAGTTTGAAGCTCTTTATGCAAAGT 6579894 Score = 89.7 bits (98), Expect = 6e-13 Identities = 221/335 (66%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 112299 CAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 112358 |||| |||||||||| ||||| || ||||||||||| |||| ||| ||| Sbjct 6580184 CAAATCGAGACTGGTCTTCCATACATCACCTACAAAGACGCTGCCAACCGGAAGTCGAAT 6580243 Query 112359 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACA 112418 || ||||| | || |||||| |||| || ||||| || || ||| |||| | | Sbjct 6580244 CAGCAGAATCTCGGAACCATCAAGTGTTCGAATCTCTGCACCGAGATCATGGAGTACTCT 6580303 Query 112419 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 112478 | ||| ||| || ||||| || || || || || |||||| || | || | Sbjct 6580304 GCTCCAGACGAGGTCGCAGTGTGCAATCTTGCTTCGATTGCTCTCAACAGATTCGTCACT 6580363 Query 112479 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538 | ||| |||| || || |||| |||||| ||| ||||| ||| | || | | Sbjct 6580364 GCCGAG---AAGAAGTTCGACTATGCCAAACTCGCCGAGGTTACCAAAGTGATAACGAGA 6580420 Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 112598 || || |||| | || ||| || | ||||| || ||| || || || || || Sbjct 6580421 AATCTGAACAAGATCATCGATGTCAACTACTACCCAGTAGAGGAGGCCCGCAACTCGAAC 6580480 Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGG 112633 ||| | || || ||||| ||||| ||||| ||||| Sbjct 6580481 ATGCGTCATCGCCCAATCGGTCTTGGTGTTCAAGG 6580515 >seq625 Length=33334924 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 176894 TCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACC 176953 |||||||| || | ||| |||||||| |||||||||||||| | || ||||| || Sbjct 1428132 TCACGAACGTTGAGAAGCTTTCCACGAAGTGGGAAGACACCGTACTTGTCACGACCGACG 1428191 Query 176954 ACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTA 177013 || | |||||| ||||| || | ||||| |||||||| ||||| || | || || || Sbjct 1428192 ACTGCGAGACCAGCAACTGCCAAAGTTTTAGCAGAATCTCCCTCAGTAAGAATCAGAGTG 1428251 Query 177014 CACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 177069 || || ||| | | || ||||| | ||| || || || | ||| || ||||| Sbjct 1428252 CAATTCTGAGAATTTTTAGTTCCCGCATCGTTAGCGTCCTCGAGTTTCGGGATACC 1428307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737240078800