Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq626 113 5e-20 >seq626 Length=20921866 Score = 113 bits (124), Expect = 5e-20 Identities = 225/330 (68%), Gaps = 5/330 (2%) Strand=Plus/Minus Query 110113 CCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACG 110172 || |||||||| ||||| || |||||||| |||||| ||| || || ||||| Sbjct 6580515 CCTTGAACACCAAGACCGATTGGGCGATGACGCATGTTCGAGTTGCGGGCCTCCTCTACT 6580456 Query 110173 GGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCA-CAGTCTTCGTGATTTC 110231 ||||| ||||| ||||||| | || ||||| |||| | || | || || | || Sbjct 6580455 GGGTAGTAGTTGACATCGATGATCTTGTTCAGATTTCTCGTTATCACT-TTGGTAACCTC 6580397 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAAT 110291 ||||||| | || |||||| ||| |||| | |||| || || ||||||||| Sbjct 6580396 GGCGAGTTTGGCATAGTCGAAC---TTCTTCTCGGCAGTGACGAATCTGTTGAGAGCAAT 6580340 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACA 110351 || |||||||||||||| | ||||||| | | ||| |||| || || || || Sbjct 6580339 CGAAGCAAGATTGCACACTGCGACCTCGTCTGGAGCAGAGTACTCCATGATCTCGGTGCA 6580280 Query 110352 CAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATC 110411 | || |||| ||| ||| || | |||| ||||||||| || |||| || || Sbjct 6580279 GAGATTCGAACACTTGATGGTTCCGAGATTCTGCTGATTCGACTTCCGGTTGGCAGCGTC 6580220 Query 110412 CTTATAGAGCATGTATGGGGTACCAGTTTC 110441 || ||| |||||||| |||||| || Sbjct 6580219 TTTGTAGGTGATGTATGGAAGACCAGTCTC 6580190 Score = 113 bits (124), Expect = 5e-20 Identities = 170/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||||| || | || ||||| || || ||||| || ||||||| |||| | ||||| Sbjct 6580817 CTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCAT 6580876 Query 109461 TGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATC 109520 ||| | || || |||| | ||||| | ||| | || ||||| ||||| Sbjct 6580877 TGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGATC 6580936 Query 109521 GATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTA-ATTTCCCAGA 109579 ||||||| |||||||||||| ||||| |||||||| | ||||| | | || ||||| | Sbjct 6580937 GATGAATGCACCACGATCAGCAGCCATCTCGATGAT-CTCTTTTTGTGATATCTCCCACA 6580995 Query 109580 CAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCA 109638 |||| ||||| | |||||||||||| || || | ||||||| ||||| || ||| Sbjct 6580996 CAGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCCA 6581054 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||||| || | || ||||| || || ||||| || ||||||| |||| | ||||| Sbjct 6571276 CTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCAT 6571335 Query 109461 TGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATC 109520 ||| | || || |||| | ||||| | ||| | || ||||| ||||| Sbjct 6571336 TGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGATC 6571395 Query 109521 GATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGAC 109580 ||||||| |||||||||||| ||||| |||||||| ||| || || ||||| || Sbjct 6571396 GATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCCTTCTGTGATATCTCCCACAC 6571455 Query 109581 AGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| ||||| | |||||||||||| || || | ||||||| ||||| || Sbjct 6571456 AGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGA 6571509 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||||||||| | || || || || | ||| ||||| || || ||||| Sbjct 6564922 CGTCGAGAGTAGATGTTCGATGTATATGGCTCAATCGACTTGTTGTTTCCGAGAATTTGG 6564981 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 |||||||| ||||| ||||| ||||||||||| |||||||| |||| Sbjct 6564982 GCAGTGGAGGCTGTTGGCATTGGAGCCATGAGCAGACTGTTGCGGA 6565027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971104137000