Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq626 134 2e-26 >seq626 Length=20921866 Score = 134 bits (148), Expect = 2e-26 Identities = 407/626 (65%), Gaps = 11/626 (2%) Strand=Plus/Minus Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTG 106750 |||||| || || ||||||||||| || ||| | || |||| ||| ||||| || | Sbjct 6579894 ACTTTGCATAAAGAGCTTCAAACTCTTCTCCC-CAGCAGTCGTCGAGTCCTGGGCACTCG 6579836 Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 ||| || | || ||||| | | | | ||| || ||||||||||| ||||| || Sbjct 6579835 CATGGGCACATCAGCGACCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGC 6579776 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 | ||| || | || ||||| | | || ||||||| ||| ||| || Sbjct 6579775 ACCCAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGA 6579716 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | | | |||||| | || ||| ||||||||||||||||| |||| |||| || ||| Sbjct 6579715 AGAGCGACGAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCC- 6579657 Query 106931 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 106984 | | ||| || | |||| ||||| || |||||| ||| | || |||||| Sbjct 6579656 --TGGGCGCTTGTTTCCTCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGC 6579599 Query 106985 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 107044 || || || | |||| || ||||| || || ||| |||| | || | Sbjct 6579598 ATCGGGATGAGCCCATTGGAAGTTCCATTGGTTCCGGCAATGACAGATCCTGTAGCGCGA 6579539 Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | | |||| || | ||||| || || || | ||| ||||| | ||||||| | | Sbjct 6579538 ATCTTGTGGACGTTGAGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTC 6579479 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 | || | ||||| ||| || || ||||| | | | || |||||||| ||| Sbjct 6579478 AAGGTATCGTAGATTCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGAC 6579419 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 ||||| || | ||| |||| |||||||| ||||| | || || | | | Sbjct 6579418 ATCTGTGGGCGACATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGC 6579359 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | |||||| | ||| ||||| | | ||| | ||||| || ||||| || |||||| Sbjct 6579358 TCCGACATCAGATTGTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATG 6579299 Query 107285 GCCACACGCATAAACATGTATTGGGG 107310 || |||||||| ||||| | ||| || Sbjct 6579298 GCGACACGCATCAACATCTGTTGTGG 6579273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975895784600