Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq625 89.7 6e-13 >seq625 Length=33334924 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 154871 TATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATG 154930 ||| ||| | || || ||||| || ||||| || || ||| || ||| | | | || Sbjct 32528865 TATCATGGTCACCTATCCATCAACTCATGGCGTTTTCGAATCTTCGATTCGTGATGTTTG 32528924 Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990 | | | || ||||| | || || || || ||| | ||||| || || | ||||| || Sbjct 32528925 TGATAAAGTACATGAACACGGAGGACAAGTTTATTTGGATGGGGCCAACATGAATGCTCA 32528984 Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050 || ||| | || | || || ||| || |||| ||| | || ||||| || Sbjct 32528985 AGTTGGATTGTGCCGTCCTGGAGATTACGGTAGTGACGTATCACATTTGAATTTACACAA 32529044 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||||| ||||||||||| |||||||| ||||| || || ||||| || || || Sbjct 32529045 AACATTTTGTATTCCACACGGAGGTGGTGGTCCAGGAGTTGGTCCAATTGGAGT 32529098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207985293600