Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq542 176 1e-38 seq549 150 4e-31 >seq542 Length=114868 Score = 176 bits (194), Expect = 1e-38 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || ||||||||||| || || |||||||| || | |||||||| |||||||| Sbjct 77430 AACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 77489 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| |||| || |||||||| || || ||||| |||||||| Sbjct 77490 GAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 77549 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| || || ||||| || ||| ||||| || ||||| | || || Sbjct 77550 GATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTTTT 77609 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| ||||| ||||| | |||||| Sbjct 77610 TCCAGTCAACGTTTTGACGAAGATTTGCAT 77639 Score = 174 bits (192), Expect = 3e-38 Identities = 165/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || ||||||||||| || || |||||||| || | |||||||| || || || Sbjct 76699 AACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCCTC 76758 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||||||||||| || |||||||| || || || || |||||||| Sbjct 76759 AAGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 76818 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||||||||| || ||| ||| || |||||||| | ||||| Sbjct 76819 GATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATGGTCTT 76878 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||| | || || ||||| | |||||| Sbjct 76879 TCCTGTGAGGGTCTTGACGAAGATCTGCATT 76909 Score = 167 bits (184), Expect = 5e-36 Identities = 172/224 (77%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTC-TTTTTGAATATTGTAATCGGCAAGAG 194977 |||||| | | ||| | |||||||||||| || |||||| || ||||| |||| | || Sbjct 76915 TCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGACAAAG 76974 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | ||||| || |||||||| || |||||||| | || ||| || ||||| || || | Sbjct 76975 TGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTC 77034 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||||||||| || ||||||||||||||||||||| ||| || ||||| | Sbjct 77035 CTTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCA 77094 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||||||| |||| ||||| || || | |||||| Sbjct 77095 ATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCATT 77138 Score = 163 bits (180), Expect = 6e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||||| || || || ||||| |||| ||| || | ||||| || Sbjct 75963 AACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGACCATCCTC 76022 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || |||||||| | |||||||| ||||| || || || || |||||||| Sbjct 76023 AAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTG 76082 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||||||||||||||| ||| || ||||| | ||| | ||||| Sbjct 76083 GATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAAGGTGATGGTCTT 76142 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || ||||| | ||||| Sbjct 76143 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 154 bits (170), Expect = 3e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||||||||| ||||| || || || ||||| || | || || Sbjct 76459 TCTGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGT 76518 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| ||||| ||||| || |||||||| | || ||| || ||||| || || || Sbjct 76519 ACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCC 76578 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || |||||||||||| || ||||| || ||| || ||||| Sbjct 76579 TTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAG 76638 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| ||||||||||| | ||||| ||||| | |||||| Sbjct 76639 AGTAATGGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCATT 76681 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||||| |||||| ||||||||||| ||||| |||||||| || || Sbjct 76309 CTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 76368 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| |||||||| || ||| || || || || | |||||||| || Sbjct 76369 GGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGAGTGATAGTCTTTCCGGT 76428 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || | ||| | ||||||| Sbjct 76429 GAGGGTCTTAATGAAAATTTGCATT 76453 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || |||| ||| || ||||| || || || || |||||||| || || Sbjct 77269 TTACCGGCGAAAATGAGTCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTG 77328 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||||||| || ||||| || ||| || ||||| |||| ||||||||||| Sbjct 77329 GCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCCTGTG 77388 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | |||||| Sbjct 77389 AGTGTTTTGACGAAGATCTGCATT 77412 >seq549 Length=112515 Score = 150 bits (166), Expect = 4e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || || || ||||| ||||| || ||||| |||| | ||| | ||||| || Sbjct 111914 AACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTC 111973 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| | ||||| || ||||| || || || ||||||||||| Sbjct 111974 GAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTG 112033 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| |||||||| || ||| || |||||||| | ||||| Sbjct 112034 GATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGGTCTT 112093 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || | ||| || ||||| | |||||| Sbjct 112094 TCCAGTGAGAGTCTTGACGAAGATCTGCATT 112124 Score = 150 bits (166), Expect = 4e-31 Identities = 168/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||| |||||||| || ||| || | |||||||| | | ||| Sbjct 112130 TCTGAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTGGA-TGTTGTAATCCGACAAAGT 112188 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || |||||||| | || ||| || |||| ||| | | Sbjct 112189 GCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGTGGGATTCC- 112247 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||||||||| || ||||||||||||||||||||| ||| || ||||| | Sbjct 112248 -TCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGACTTCCAA 112306 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| ||||||||||| ||||| | ||||| Sbjct 112307 GGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 Score = 131 bits (144), Expect = 4e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| || || || |||||||| || | |||||||| || || || |||||| Sbjct 112374 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCCTCAAGCTGC 112433 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | || ||| |||||||| || || || || |||||||| || || Sbjct 112434 TTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTA 112493 Query 195058 TGCTTGACGTTCTCAATGGTGT 195079 |||||||||||||||||||| Sbjct 112494 GCCTTGACGTTCTCAATGGTGT 112515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109472146870055