Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq542 118 7e-22 seq549 102 5e-17 >seq542 Length=114868 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| | | ||||||||||| || || ||||| ||||| ||||| | Sbjct 75944 TTCCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 76003 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||||| | || |||| || || || |||||||| || || | ||||| || ||| | | Sbjct 76004 AAAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTG 76063 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| ||||| |||||| | || | || ||||| | Sbjct 76064 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGA 76123 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| ||||| || | |||||| || |||||||||||| Sbjct 76124 CTTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 76173 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||||||||||| || || ||||| ||||| ||||||| Sbjct 76452 TTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 76511 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | ||| |||| || || || |||||||| || || | || |||||| ||| | | Sbjct 76512 AGAGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTG 76571 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||| |||||| | || | ||| ||| || | Sbjct 76572 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGA 76631 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||| ||||| ||||| || || || ||||||||||| Sbjct 76632 CCTCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCAT 76680 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || || ||| | | || || ||||| |||||||| || Sbjct 76718 TCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAG 76777 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | ||||||||||| ||||| |||||| Sbjct 76778 ATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 76837 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || ||||| || | ||| ||||| ||||| ||||| ||||| || Sbjct 76838 TCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 76897 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 76898 AAGATCTGCAT 76908 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTC-TTTCTGAATGTTATAGTCC 34811 ||||||| || | | | ||||||||||| ||| ||| ||| || ||||| ||||| Sbjct 76908 TTCCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCG 76967 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || | | || |||| || ||||| |||||||| || || | || |||||| ||| | Sbjct 76968 GACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGT 77027 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || |||||||| |||||| |||||| | || | || ||||| Sbjct 77028 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCG 77087 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || || ||||| || || || || |||||||||||||| Sbjct 77088 ACTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCAT 77137 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || || ||| | |||| || ||||| |||||||| || Sbjct 77449 TCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCGAGCTGCTTTCCGGCGAAG 77508 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | || |||||||| ||||| ||||| | Sbjct 77509 ATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTT 77568 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||||| || || | ||| ||||||||||| || | || || || Sbjct 77569 TCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGACG 77628 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 77629 AAGATTTGCAT 77639 >seq549 Length=112515 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| || | | || |||| || || || |||||||| || Sbjct 111933 TCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAG 111992 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| |||||||| ||| | || | ||||| ||||| ||||| |||||| Sbjct 111993 ATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTC 112052 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| ||||| || | ||| ||||| ||||| ||||||||||| || Sbjct 112053 TCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACG 112112 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 112113 AAGATCTGCAT 112123 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||||||||| | ||| ||| || || ||||| || |||| Sbjct 112123 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTGGATTCCTT-TGGATGTTGTAATCCG 112181 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | || |||| || ||||| |||||||| || || | || |||||| ||| | | Sbjct 112182 ACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCT-GTG 112240 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| |||||| |||||| | || | ||| ||||| | Sbjct 112241 GGATTCC-TCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGA 112299 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| ||||| || | ||| || || |||||||||||| Sbjct 112300 CTTCCAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCATA 112349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630968946120