Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq626 98.7 1e-15 >seq626 Length=20921866 Score = 98.7 bits (108), Expect = 1e-15 Identities = 333/517 (64%), Gaps = 4/517 (1%) Strand=Plus/Minus Query 48308 ATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTG 48367 ||| || |||||||| || | || || || | | ||||| || || || ||||| || Sbjct 6579695 ATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCCTCCCTG 6579636 Query 48368 ATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATAT 48427 ||| | ||| | || || ||||| || || | | ||| |||| | ||||| || | Sbjct 6579635 ATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCATTGGAAGT 6579576 Query 48428 ACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA--TTGAAATACCT 48485 ||||||||||| | ||| | ||| |||| | || || | ||| | || Sbjct 6579575 TCCATTGGTTCCGGCAATGACAGATCCTGTAGCGCGAATCTTGTGGACGTTG--AGTCCA 6579518 Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545 || || || || | || || || ||||||||| | || | |||||| || ||||| Sbjct 6579517 ATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGATTCCGAGA 6579458 Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCT 48605 || ||| || |||| | | || || || ||||| || || |||| ||||| Sbjct 6579457 ATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGACATGTTCCA 6579398 Query 48606 GAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTT 48665 || || || | ||||| || ||||| | | || ||| || | || || || || Sbjct 6579397 GAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATTGTACGTC 6579338 Query 48666 TCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATAT 48725 || || ||| | || | | | || ||||| || | |||||||| ||||| | | Sbjct 6579337 TCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAACATCTGT 6579278 Query 48726 TGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTA 48785 || || | ||||| | || || || || |||| |||||| || || | || || Sbjct 6579277 TGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAGAGTCTTG 6579218 Query 48786 AAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAA 48822 || || || || |||| ||| |||| ||||| || Sbjct 6579217 AATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAA 6579181 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||||||||||| || | ||| || ||||| || || ||||| || | || || || Sbjct 3165398 TTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCCGTCGATCGAAATGTTCTC 3165339 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAG 18791 ||| || |||||||| || || || || || | ||| | |||| | ||| || | Sbjct 3165338 CATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACATCCGAGCTCTTGGAGCAA 3165279 Query 18792 TCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 ||| || ||||| | ||| ||| | ||||| | |||||||||||| || | | Sbjct 3165278 ATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACAATTCATTCCGATCATATC 3165219 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT 18900 || || || || ||||| || ||||||||||| || | || || ||| Sbjct 3165218 GACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGACGGCGTCT 3165170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104127470600