Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_018848.1 Length=37612 Score E Sequences producing significant alignments: (Bits) Value seq243 86.0 2e-12 >seq243 Length=1117 Score = 86.0 bits (94), Expect = 2e-12 Identities = 223/333 (67%), Gaps = 9/333 (3%) Strand=Plus/Minus Query 30169 ATGGCCGGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGG 30228 |||||||| || | | ||||||||| || || ||| | |||||||||||||||| | Sbjct 573 ATGGCCGGCGAGCCGCTGATCACCGTCGTCGGGAACCTGGTTGCCGACCCCGAACCGCGC 514 Query 30229 TTCACCCCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTC 30288 ||| || ||||| || | || |||||| |||||||||| || ||| | | Sbjct 513 GTCAGCCAGGCCGGTAAGTCCTGGGTGACGTTCCGGATCGCCTCGACGCCGCGCGTGCGC 454 Query 30289 GACCGCACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCT-GTCCGTCTC-CGTAT 30346 ||||| | ||| ||| ||||||||| | |||||||| | | | | | | | Sbjct 453 GACCGTCAGTCGGGCGACTGGTCGGACGGCGAGGCGCTGTTCCTCGGCTGCCGCGCCTTC 394 Query 30347 GGCGCCAGCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGAC-CGCGTGATCGTC 30405 |||| || | || || ||| |||||| || | |||| || || || ||||||||| Sbjct 393 GGCG--AGTACGCGGACAACATCGCCGCGTCGCT-CACCAAGGGCACGCGAGTGATCGTC 337 Query 30406 GTCGGCACCCTCGCCCAGCGCACGTA---CGAGAAGGACGGCGAGCGCCGAGCGTCCTAC 30462 ||| ||| ||||||||| || ||| || | || ||| || | || | Sbjct 336 CAGGGCCGTCTCACCCAGCGCAGCTACACCGACAACCAGGGGCAGCAGCGCACCTCGCTC 277 Query 30463 GAGGTCAAGGCCGAGGAAGTCGGCCCCGCGCTC 30495 || || ||| ||| || ||||||||| ||||| Sbjct 276 GACCTCGAGGTCGAAGAGGTCGGCCCCACGCTC 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120235850505020