Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq542 93.3 3e-14 seq549 87.8 1e-12 >seq542 Length=114868 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || |||||||| ||||| ||| ||| | || || | ||| Sbjct 77436 ATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCGAGCTG 77495 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || || |||| ||| || || | || | || |||||||| ||||| Sbjct 77496 CTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 77555 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || ||||||||||||| || || |||||||| || Sbjct 77556 GGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGT 77615 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||||| || || || ||||| Sbjct 77616 CAACGTTTTGACGAAGATTTGCAT 77639 >seq549 Length=112515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || ||| || ||| || | |||||||| || Sbjct 112125 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTGGA-TGTTGTAATCCGAC 112183 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || || | |||||| ||||| || |||| || || ||||| |||||| Sbjct 112184 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGTGGGA 112243 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 |||||||||| |||||| || || | | | || || ||||| || Sbjct 112244 TT--CCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGACT 112301 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| ||||||||||| || || |||||||| Sbjct 112302 TCCAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934512619795