Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq626 140 6e-28 >seq626 Length=20921866 Score = 140 bits (154), Expect = 6e-28 Identities = 225/320 (70%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||| ||||| | || | || ||||||||||| || | ||||| || || |||||| Sbjct 3165001 ACCCGGCATAAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCGCTGAAGAA 3164942 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| ||||| || || ||||| ||| |||| | || |||| || || ||||||||||| Sbjct 3164941 GATACCCTCGACGGCGGCGAAAGCGATGAGTCGTTCGGCGAACGACGCTTTCTTGTCTGA 3164882 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCA-TGGCA-TCGTCTCTATGGCC 48367 |||||| ||| |||||||| |||||||||||||| | | | | ||| ||||| Sbjct 3164881 AATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGATAAACTCGAATTCG--AAGATGGCG 3164824 Query 48368 CGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 ||| || | | | ||| | || | ||| || | ||||| | |||| Sbjct 3164823 TTGAAAAGAGTGTGACGCTCCGTCTCATCACGGATATACGTCTCAATGAGCTTCGAGTAC 3164764 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||| || || | |||||| || ||||| ||||| ||||||||| | |||||| || Sbjct 3164763 ATCTCCGAATGAATATTCTCGATGGCGATTTGGAATCCGTAGAAGAAACGGGCCTCCGAC 3164704 Query 48488 ACCTGCACTTCTGTGGAGAA 48507 |||| |||||| | ||||| Sbjct 3164703 ACCTTCACTTCATTCGAGAA 3164684 Score = 104 bits (114), Expect = 4e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 212894 CTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA 212953 ||| | || ||| || ||||| |||||||||||||| ||||| || | | ||| | Sbjct 6564876 CTTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGAT 6564935 Query 212954 GTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGT 213013 ||| || || || ||||| || || |||||| || ||||| || |||||| |||||| Sbjct 6564936 GTTCGATGTATATGGCTCAATCGACTTGTTGTTTCCGAGAATTTGGGCAGTGGAGGCTGT 6564995 Query 213014 GGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 ||||| ||||||| || |||||||| | ||||| ||| Sbjct 6564996 TGGCATTGGAGCCATGAGCAGACTGTTGCGGACTCCATGC 6565035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931525056633600