Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq626 105 1e-17 >seq626 Length=20921866 Score = 105 bits (116), Expect = 1e-17 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 ||||||| ||| || | ||||| || ||||| ||| | || |||||||| | Sbjct 6579877 TCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCGAC 6579818 Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073 || | || | | | ||| | || ||||||||||||||| | ||| || ||| | || Sbjct 6579817 CAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGAAC 6579758 Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133 ||||| | | |||| ||| || ||| |||| || | ||| | | ||||| || Sbjct 6579757 AGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACTCGAAG 6579698 Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193 | || |||||||| ||||| || |||| ||| | ||| || || |||||||| || ||| Sbjct 6579697 ACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCCTCCC 6579638 Query 222194 TGATCCAC 222201 ||||| || Sbjct 6579637 TGATCAAC 6579630 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 || ||| |||||||||||||| ||| ||||| ||| |||| |||| ||| | | Sbjct 3165243 CTGATGTCCCAATACATTGAGTTTGTCGCCGATCATTTGCTCCAAGAGCTCGGATGTGAC 3165302 Query 26227 AGACTCTACAGTACGCCTA--ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 | ||| |||| | | | | |||| || ||||| ||||| ||||| ||| | || || | Sbjct 3165303 AAACTGTACA--AAGTCAAGAACCCATTTGACTTCATGGAGAACATTTCGATCGACGGAA 3165360 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||||||| || || | ||| ||| |||||| Sbjct 3165361 AGACCAACTTCTTCGAGAAACGTGTCTCCGAATATCAA 3165398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928837078977600