Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq625 89.7 6e-13 >seq625 Length=33334924 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| ||||| || || ||||| |||||||| ||||||||||| ||||| || ||| Sbjct 32529098 ACTCCAATTGGACCAACTCCTGGACCACCACCTCCGTGTGGAATACAAAATGTTTTGTGT 32529039 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||| | ||| |||| || ||| || || | || | || || || ||| Sbjct 32529038 AAATTCAAATGTGATACGTCACTACCGTAATCTCCAGGACGGCACAATCCAACTTGAGCA 32528979 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||| || || || || | ||||| || | | ||| | Sbjct 32528978 TTCATGTTGGCCCCATCCAAATAAACTTGTCCTCCGTGTTCATGTACTTTATCACAAACA 32528919 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 | | || | ||| || || |||||||| |||||||| || | ||| ||| Sbjct 32528918 TCACGAATCGAAGATTCGAAAACGCCATGAGTTGATGGATAGGTGACCATGATA 32528865 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 || ||||| ||||||| | | |||||||||| || || || ||||| ||||||||||| Sbjct 32527767 CCGTGATAGACTGCATACATTGCAGACATATTGGCAAGAAGAGCTTGAGCTGTGCAGATA 32527708 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 ||||| || || || || | || |||||| || || | ||||| || || || | | Sbjct 32527707 TTACTTGTCGCCTTATCACGTCGAATATGTTGTTCACGGGTTTGAAGAGCCAAACGGAGA 32527648 Query 139392 GCAGGATTGCC 139402 ||| |||| || Sbjct 32527647 GCACGATTTCC 32527637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578993587075800