Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq626 111 2e-19 seq625 105 8e-18 >seq626 Length=20921866 Score = 111 bits (122), Expect = 2e-19 Identities = 403/626 (64%), Gaps = 11/626 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 ||||| | ||||| ||||| ||||| ||||| || ||||| || ||||| | ||| | Sbjct 6579273 CCACAACAGATGTTGATGCGTGTCGCCATCGGTATTCACGGAGAGAACATTCAAGCTGCC 6579332 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| | |||||| | | | | || || | ||||| |||||| Sbjct 6579333 ATCGAGACGTACAATCTGATGTCGGAGCGATACATGACGCATGCTTCCCCAACTCTCTTC 6579392 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || |||| ||| | || |||||||| |||||||| || | | | ||||| Sbjct 6579393 AACTCTGGAACATGTCGCCCACAGATGTCGTCGTGCTTCCTGCTCACAATGAGCGAGGAT 6579452 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || ||| ||||| | || | | | ||||||| | ||||| ||| | || || Sbjct 6579453 TCGATTCTCGGAATCTACGATACCTTGAAGCAGTGTGCTCTCATCTCGAAGAGTGCCGGA 6579512 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 || ||||| | || |||| | | | || | |||| ||| || || ||| Sbjct 6579513 GGAATTGGACTCAACGTCCACAAGATTCGCGCTACAGGATCTGTCATTGCCGGAACCAAT 6579572 Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 || || |||| | || || |||||||| || | ||| |||||| || ||||| Sbjct 6579573 GGAACTTCCAATGGGCTCATCCCGATGCTTCGTGTCTACAACAACACAGCTCGTTATGTT 6579632 Query 75572 AATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 |||| | || ||| | ||| | | |||| ||||| | || |||||||| Sbjct 6579633 GATCAGGGAGGAAACAAGCGCCC--AGGAG-CTTTCGCCATCTACCTTGAGCCATGGCAC 6579689 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 |||||| || | |||||| | | | || ||| ||| ||||||| || | Sbjct 6579690 GCCGATGTCTTCGAGTTCGTCGCTCTTCGCAAGAACACCGGTCCAGAAGAGGAGCGTGCT 6579749 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | ||||| || | || ||| | || ||||| ||||||||||| || ||| | | | Sbjct 6579750 CGTGATCTGTTCCTGGCTCTCTGGGTGCCGGACCTCTTCATGAAGCGCGTCGAGAAAGAT 6579809 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGA 75804 | ||||| || | || ||| | || ||||| ||| |||| || | ||| || Sbjct 6579810 CAGGATTGGTCGCTGATGTGCCCATGCGAGTGCCCAGGACTCGACGACTGCTG-GGGAGA 6579868 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGT 75830 ||||||||||| || || |||||| Sbjct 6579869 AGAGTTTGAAGCTCTTTATGCAAAGT 6579894 Score = 107 bits (118), Expect = 2e-18 Identities = 279/416 (67%), Gaps = 22/416 (5%) Strand=Plus/Minus Query 76522 AACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAA 76581 ||| |||||||| || ||||| | || || || || | |||| ||||||||| | || Sbjct 6581234 AACGGCCTCCACTGCTCAAATTCTCGGAAACAACGAGTCGATTGAGCCATACACATCGAA 6581175 Query 76582 CATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAA 76641 ||||||| || | ||| | ||||| || |||||||| ||| | | || Sbjct 6581174 CATCTACTCTCGACGTGTTCTCTCCGGTGACTTCCAGATTGTCAATCCACACATGCTGAA 6581115 Query 76642 TGACCTC-----AAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT-GAA 76695 ||| | |||| ||||| ||| | | || |||||| ||| || | | Sbjct 6581114 GGACTTGGTTGAAAGAGGATTG-----TGGAGCGATGAGATGAAGAATCGATTGATTGCC 6581060 Query 76696 AGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCG 76755 | | ||| || ||||| || ||| | | |||||||||||||||||| | || ||||| Sbjct 6581059 AACAA-TGGATCAATTCAGAACATCGCCGGAATCCCAGATGATATCAAGGAACTGTACCG 6581001 Query 76756 CACAGTGTGG--GAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC 76813 ||| |||||| || |||| | ||||| |||| || ||||| || ||||||||| Sbjct 6581000 CACTGTGTGGGAGATATCACAA--AAAGAGATCATCGAGATGGCTGCTGATCGTGGTGCA 6580943 Query 76814 TTCATTGATCAAAGTCAA--AGTATGAATCTATTCATGG-AAAGTCCAACGATGTCCAAG 76870 ||||| |||||| |||| | | ||| || |||| ||| | | | | | || Sbjct 6580942 TTCATCGATCAATCTCAATCACTCAACATCCAT--ATGGCCAAGCCGAGCTACG-CCGGT 6580886 Query 76871 CTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 || | || ||||| | |||| ||||| |||| ||||| || ||||||||||| Sbjct 6580885 ATCACATCAATGCACTTTTACGGATGGAAGAAGGGACTCAAGACTGGAATGTACTA 6580830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 76706 TCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGG 76765 || ||||| || ||| | | |||||||||||||||||| | || |||||||| |||||| Sbjct 6571509 TCAATTCAGAACATCGCCGGAATCCCAGATGATATCAAGGAACTGTACCGCACTGTGTGG 6571450 Query 76766 GAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAA 76825 || || ||| || |||| || ||||| || ||||||||| ||||| |||||| Sbjct 6571449 GAGATATCACAGAAGGAGATCATCGAGATGGCTGCTGATCGTGGTGCATTCATCGATCAA 6571390 Query 76826 AGTCAA--AGTATGAATCTATTCATGG-AAAGTCCAACGATGTCCAAGCTCTCTTCTATG 76882 |||| | | ||| || |||| ||| | | | | | || || | || ||| Sbjct 6571389 TCTCAATCACTCAACATCCAT--ATGGCCAAGCCGAGCTACG-CCGGTATCACATCAATG 6571333 Query 76883 CATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 || | |||| ||||| |||| ||||| || ||||||||||| Sbjct 6571332 CACTTTTACGGATGGAAGAAGGGACTCAAGACTGGAATGTACTA 6571289 >seq625 Length=33334924 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACT 13612 ||||| || || | || ||||| ||| | ||||| || | | ||| || || ||| Sbjct 1428307 GGTATCCCGAAACTCGAGGACGCTAACGATGCGGGAACTAAAAATTCTCAGAATTGCACT 1428248 Query 13613 CTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTT 13672 || ||| | || ||||| ||||| |||||||| | || ||||| |||||| | ||||| Sbjct 1428247 CTGATTCTTACTGAGGGAGATTCTGCTAAAACTTTGGCAGTTGCTGGTCTCGCAGTCGTC 1428188 Query 13673 GGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA 13710 |||||||| | |||||||| ||||||||||| || || Sbjct 1428187 GGTCGTGACAAGTACGGTGTCTTCCCACTTCGTGGAAA 1428150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564641015200