Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq542 109 8e-19 seq549 98.7 1e-15 >seq542 Length=114868 Score = 109 bits (120), Expect = 8e-19 Identities = 153/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| |||| ||||| || || ||||| |||||||| | ||| Sbjct 77138 AATGCAGATCTTTGTCAAAACCCTGACCGGAAAGACGATCACATTGGAAGTCGAGGCTTC 77079 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 77078 CGACACCATTGAGAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCA 77019 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | ||||| |||||||| || ||| | ||||| || || || | Sbjct 77018 GCAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACA- 76960 Query 156002 TATATCCAAAGAGG---CGACGCTTCATTTAGT 156031 | ||||||| ||| | || ||||| || || Sbjct 76959 -ACATCCAAAAAGGAATCCACTCTTCACTTGGT 76928 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||||||||| || || | || || || | |||| Sbjct 77639 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCT 77580 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || || || || ||||| || ||||| || || ||||| || Sbjct 77579 GATACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 77520 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||| ||||||||||||||| |||||| | || || || ||| Sbjct 77519 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAAGATGGAAGAACTCTCTCTGACTACAAT 77460 Query 156003 AT 156004 || Sbjct 77459 AT 77458 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | |||||| | || ||||| || ||||| | || ||||||| || Sbjct 76681 AATGCAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTC 76622 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 76621 TGACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 76562 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | ||||| ||||| ||||| ||| | || | || || || || Sbjct 76561 GCAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACCCTCTCGGACTACAA 76502 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| ||||| || || Sbjct 76501 CATCCAGAAGGAGTCGACTCTTCACTTGGT 76472 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || || || || |||||||| | ||| Sbjct 76172 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCC 76113 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || || || || || ||||| ||| Sbjct 76112 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 76053 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||||| ||||| || || ||| | || | || || || || Sbjct 76052 CAACGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAAC 75993 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| |||| ||||| || || | | || ||||| || Sbjct 75992 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTCCGTTTGAGAGGAGG 75946 >seq549 Length=112515 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||||||||| || || || || |||||||| | |||| Sbjct 112348 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 112289 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| ||| ||| || || |||| || Sbjct 112288 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGA-CAAGGAGGAAT-CCCACAGATCAG 112231 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| |||||||| || ||| | ||||| || ||||| | Sbjct 112230 CAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGATTACA-- 112173 Query 156003 ATATCCAAAG 156012 | |||||||| Sbjct 112172 ACATCCAAAG 112163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865916314000