Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq542 93.3 8e-14 >seq542 Length=114868 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | ||| | ||| || || || || || Sbjct 76451 ATTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCC 76510 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | ||| || || || || || ||||| || || || ||| Sbjct 76511 GAGAGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGT 76570 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || || || || ||||| || || | ||| Sbjct 76571 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCG 76630 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||||||||| || || || | |||||| | ||| ||||||||| Sbjct 76631 ACCTCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCATT 76681 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171922 ATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTA 171981 ||| |||||| || ||||| | ||| || || || ||||| ||||| || || ||||| | Sbjct 77264 ATTATTTACCGGCGAAAATGAGTCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGA 77323 Query 171982 TTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 | || || || || ||||| || || | ||| || || ||||||||||| || | Sbjct 77324 TCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTC 77383 Query 172042 CAGTTAATGTTTTAATGAATATCTGCATT 172070 | || | |||||| | ||| ||||||||| Sbjct 77384 CTGTGAGTGTTTTGACGAAGATCTGCATT 77412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905128476057000