Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq623 123 7e-23 seq626 113 1e-19 seq625 102 2e-16 >seq623 Length=908941 Score = 123 bits (136), Expect = 7e-23 Identities = 351/530 (66%), Gaps = 16/530 (3%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| | ||||| ||| | || | || | |||||| ||||||| ||||| Sbjct 467148 CCTATCAAAACGACCAGGACGGAGCAGGGCAGAATCAAGAATATCGACTCTGTTAGTTGC 467089 Query 288909 TGCCAATACAACAATAGAT--TCGGTTTGCT-TAAATCCATCCATACTTGTTAA-AATTT 288964 || | ||||| || ||| | | || | | ||||| ||||| | | || || || Sbjct 467088 AGCAATTACAATAACTGATGATTCATCTGTTGTGAATCCGTCCATT-TCGACAAGAAGTT 467030 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG--AATCACCCGAATCGCTCCt 289022 |||| ||||| |||| ||| | |||| || | | || || || ||||| Sbjct 467029 GATTGAGTGT--GTTCTCTTGT----TCTGAATGTCCTCCCATTCCTCCTTTTC-CTCCT 466977 Query 289023 ttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||| | ||||| || || ||||| |||||||| | | ||| || || |||| |||| Sbjct 466976 CTTTTCCTTCCAACTGCGTCGATTTCATCAATGAACAGAATACAAGGGGAGTTTTTTCTC 466917 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || |||| ||| | || | || | | | ||| | ||||| ||||||| | ||| Sbjct 466916 GCCATTGAAAACATATCACGAACTCTTGCCGGTCCTACTCCAACGAACATTTCCAAAAAC 466857 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 ||||| | || ||| || |||| ||||||||||| || || || |||||| | Sbjct 466856 TCAGATCCAGAAACTGTTATAAATGGAACATTTGCTTCTCCAGCAGTCGCTTTCGCCAAA 466797 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 || || || || |||||||||||||| || | | || || || | ||| || ||| Sbjct 466796 AGCGTTTTTCCCGTTCCAGGTGGTCCAGTTAGAATGGCACCTTTCGGAATTTTAGCACCA 466737 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | || |||| || || | || ||||| | |||| ||| || |||| || Sbjct 466736 AGATCTTTGTATTGCTGCGGATTTTTCAAAAAATTGACAAACTCCATAATTTCAATCTTA 466677 Query 289321 GCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCTT 289370 || || ||||| || || ||||| | ||| ||| || ||||| | ||| Sbjct 466676 GCTTCTTCACAACCAGCAACATCCGAAAATTTAACTTTGATATCTTCCTT 466627 >seq626 Length=20921866 Score = 113 bits (124), Expect = 1e-19 Identities = 292/443 (66%), Gaps = 4/443 (1%) Strand=Plus/Minus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || |||||||| ||||| ||||| || || ||| |||||| ||||| || || | Sbjct 6579646 TTTCCTCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGC 6579587 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||||||||| |||||||||||| ||| || || | | ||||| || || | Sbjct 6579586 CCATTGGAAGTTCCATTGGTTCCGGCAATGACAGATCCTGTAGCGCGAATCTTGTGGACG 6579527 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | |||||||| || || | | || || || |||| || | ||| | |||| | | Sbjct 6579526 TTGAGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAG 6579467 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 || || ||| ||||| || ||||| || || ||||||| | || || || Sbjct 6579466 ATTCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGA 6579407 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359 |||||||| |||||| || || || | ||||| | | || | ||||| | Sbjct 6579406 CATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGA 6579347 Query 156360 TCGTATGTCTCCTT--AATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCA 156417 | ||| ||||| | | || | || || |||||||||| ||| | ||| | || Sbjct 6579346 TTGTACGTCTCGATGGCAGCT--TGAATGTTCTCTCCGTGAATACCGATGGCGACACGCA 6579289 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 || |||| || || || ||||| || | || | || |||||| || | || | Sbjct 6579288 TCAACATCTGTTGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCT 6579229 Query 156478 CCAGAGTTTTAAACCCGAAATAA 156500 | ||||| || || ||||| ||| Sbjct 6579228 CAAGAGTCTTGAATCCGAAGTAA 6579206 >seq625 Length=33334924 Score = 102 bits (112), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 60139 TTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAA 60198 ||| |||||||| || | | || || ||| || || || ||||||||| ||||| Sbjct 1427189 TTGCGTGAAAATGTAACGAGCAGAAGCACTGTCTTTTCCTCCTTGAAGACGGGTACCAAA 1427248 Query 60199 TTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACC 60258 |||||| |||| | | ||||| ||||||||||| || ||||||| |||||| ||| Sbjct 1427249 CTGTCCGATTGGAAGAAGAAGATTGATGTTGTTAGATCCGACGAAATCTTGAGCAAGATT 1427308 Query 60259 AACAATAGCACCATTTAA--ACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACA 60316 ||||||| || | || |||| ||| |||||||| ||| | || |||| | |||| Sbjct 1427309 CACAATAGTTCCCATCAACGACTG--TTCTCCGTGATGGTATGCGGAGAGTTCGGCAACA 1427366 Query 60317 TATCCACTGAATTGTGCGACTTTAATTTC 60345 ||| | ||| |||||||| | ||| Sbjct 1427367 GCTCCGGCAAGTTGAGCGACTTTTACTTC 1427395 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||| ||| |||| || || ||||| || ||||| || || ||||| Sbjct 24785780 TGGCCAATGGTCATCCGAGAAGGAACGGCGTGAGGATTAATAATGATATCAGGAGTCAGT 24785721 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || ||||||||||| ||||||| ||| | || || ||| | || || || || || || Sbjct 24785720 CCTTCAGCAGTGAATGGCATAT-CTTCTTGTCGGTACATGATACCCATTGTACCTTTCTG 24785662 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || ||||| |||||| |||||||| Sbjct 24785661 ACCATGCCGAGACGCGAACTTGTCACCAAT 24785632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471805059654105