Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq625 113 6e-19 seq571 86.0 8e-11 >seq625 Length=33334924 Score = 113 bits (124), Expect = 6e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || |||||||| || || ||||| | || Sbjct 26498642 GCTTGGCGAGCTCTCCCGGAAGAATCAAACGGACGGCGGTTTGAATTTCGCGGGACGAGA 26498701 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| |||||| | | ||||||| |||| || Sbjct 26498702 TGGTCGATCTCTTGTTGTAGTGGGCAAGACGAGAGGCCTCAGCGGCGATGCGCTCGAACA 26498761 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| ||||| | ||| ||||| || ||| |||| Sbjct 26498762 CGTCGTTGACGAACGAGTTCATGATGGACATGGCTTTGGAGGAGACTCCGGTGTCAGGGT 26498821 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| || ||||| || Sbjct 26498822 GGACCTGCTTGAGTACACGGTAGATGTACACAGAGTAGGA 26498861 Score = 113 bits (124), Expect = 6e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||| || |||||||| || || ||||| | || Sbjct 26504280 GCTTGGCGAGCTCTCCCGGAAGAATCAAACGGACGGCGGTTTGAATTTCGCGGGACGAGA 26504221 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| |||||| | | ||||||| |||| || Sbjct 26504220 TGGTCGATCTCTTGTTGTAGTGGGCAAGACGAGAGGCCTCAGCGGCGATGCGCTCGAACA 26504161 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| ||||| | ||| ||||| || ||| |||| Sbjct 26504160 CGTCGTTGACGAACGAGTTCATGATGGACATGGCTTTGGAGGAGACTCCGGTGTCAGGGT 26504101 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| || ||||| || Sbjct 26504100 GGACCTGCTTGAGTACACGGTAGATGTACACAGAGTAGGA 26504061 Score = 89.7 bits (98), Expect = 6e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||||| || || || || ||||| ||||| | || Sbjct 28927715 GCTTGGCAAGCTCTCCTGGAAGGATCAAACGGACAGCCGTTTGGATTTCGCGGGAAGAGA 28927656 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || || || || || | ||||||| |||| | Sbjct 28927655 TTGTCGACCGCTTGTTGTAGTGGGCGAGGCGAGAAGCTTCAGCAGCGATGCGCTCGAAGA 28927596 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || || ||||||| |||||||| |||| |||| || || |||| Sbjct 28927595 CGTCGTTGACGAAGGAATTCATGATCGACATCGCCTTGGAAGAGACTCCGGTATCAGGGT 28927536 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAAC 1254551 | || ||||||||||| ||||||| || Sbjct 28927535 GAACTTGCTTGAGCACACGGTAGATGTAC 28927507 >seq571 Length=73461 Score = 86.0 bits (94), Expect = 8e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||||| || || ||||| || || ||||| | || Sbjct 10907 GCTTGGCGAGCTCTCCCGGAAGGATCAAACGGACAGCGGTTTGAATTTCGCGGGATGAGA 10966 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| || |||| | ||||| |||| | Sbjct 10967 TGGTCGATCTCTTGTTGTAGTGAGCAAGACGAGATGCTTCGGCAGCAATGCGTTCGAAGA 11026 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||||| |||||| | |||| |||| || || |||| Sbjct 11027 CATCGTTGACGAAAGAGTTCATGATCGACATGGCCTTGGAAGAGACTCCAGTATCAGGGT 11086 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| || ||||| || Sbjct 11087 GGACCTGCTTGAGTACACGGTAGATGTACACAGAGTAGGA 11126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107084626985805