Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq625 134 1e-26 seq542 134 1e-26 seq549 118 1e-21 seq626 107 2e-18 >seq625 Length=33334924 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| |||||||| |||||||| || ||| || Sbjct 31078860 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 31078919 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 31078920 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 31078979 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||| ||||| || || || |||||| | | | || || || ||| Sbjct 31078980 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 31079039 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || |||||||| | || | || ||||| Sbjct 31079040 ATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCCGTGGAGG 31079086 >seq542 Length=114868 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || ||||| || || || |||||| | Sbjct 76680 ATGCAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTCT 76621 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 76620 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 76561 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| || || || |||||| | | | | || || || ||| Sbjct 76560 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACCCTCTCGGACTACAAC 76501 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || |||||||| Sbjct 76500 ATCCAGAAGGAGTCGACTCTTCACTTGGT 76472 Score = 132 bits (146), Expect = 4e-26 Identities = 156/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || ||||| || || || || | ||||| || || || Sbjct 77137 ATGCAGATCTTTGTCAAAACCCTGACCGGAAAGACGATCACATTGGAAGTCGAGGCTTCC 77078 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| |||||||| || || ||||| Sbjct 77077 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 77018 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| || ||||| |||||| | | |||| || || ||| Sbjct 77017 CAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACAAC 76958 Query 24884 ATTC-AAAAGGAATCGACACTACACTTGGT 24912 || | |||||||||| || || |||||||| Sbjct 76957 ATCCAAAAAGGAATCCACTCTTCACTTGGT 76928 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || | ||||| || || || Sbjct 76172 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCC 76113 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| || || |||||| Sbjct 76112 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 76053 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| ||||| || || || |||||| | | | | || || || ||| Sbjct 76052 CAACGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAAC 75993 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || |||||||| | || ||| | ||||| Sbjct 75992 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTCCGTTTGAGAGGAGG 75946 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||| || || ||||| || ||||| || ||||| || |||||| | Sbjct 76452 ATGCAAATTTTCATTAAGACCCTCACCGGAAAGACTATCACTCTCGAGGTCGAAGCCTCT 76393 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| ||||| |||||| Sbjct 76392 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAA 76333 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||| | | |||||||| || || Sbjct 76332 CAAAGACTTATCTTTGCTGGTAA 76310 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||| | || || ||||| || || || || || || || | Sbjct 77639 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCT 77580 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||||||||| |||||||| || || || || Sbjct 77579 GATACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 77520 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || ||||| || ||| |||| | || || || || Sbjct 77519 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAAGATGGAAGAACTCTCTCTGACTACAAT 77460 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || | || | || | |||||||| Sbjct 77459 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTTCGTCTCCGCGGAGG 77413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || ||||| || || || |||||| | Sbjct 77411 ATGCAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTCT 77352 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| || || ||||| Sbjct 77351 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAG 77292 Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847 ||| | | || || ||||| ||| Sbjct 77291 CAAAGACTCATTTTCGCCGGTAAA 77268 >seq549 Length=112515 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || |||||| | Sbjct 112123 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAGCCTCT 112064 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| ||||| || || ||||| Sbjct 112063 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 112004 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| ||||| ||||| || || || |||||| | | |||| || || ||| Sbjct 112003 CAACGTTTAATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACTTTGTCCGACTACAAC 111944 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 111943 ATCCAAAAGGAGTCAACCCTCCA 111921 Score = 100 bits (110), Expect = 3e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| | || || || || || || | ||||| || || | Sbjct 112348 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 112289 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||| ||| |||||| || | ||||| Sbjct 112288 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGAC-AAGGAGGAAT-CCCACAGATCAG 112231 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| || ||||| |||||| | | |||| ||||| ||| Sbjct 112230 CAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGATTACAAC 112171 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 | || ||||||||| || || |||||||| Sbjct 112170 A-TCCAAAGGAATCCACTCTCCACTTGGT 112143 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || ||||| || || || || ||| | |||||||| ||||| || Sbjct 112492 AAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAAAGATTGATCTTCGCCGGAAAG 112433 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| |||| | || || || || || || |||||||| || || || Sbjct 112432 CAGCTTGAGGACGGAAGAACTCTCTCTGACTACAATATCCAGAAGGAATCCACTCTTCAT 112373 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | || | || ||||| Sbjct 112372 TTGGTTCTTCGTCTTCGTGGAGG 112350 >seq626 Length=20921866 Score = 107 bits (118), Expect = 2e-18 Identities = 276/415 (67%), Gaps = 4/415 (1%) Strand=Plus/Plus Query 138186 TGGTTTCGTTCTCAGATAATACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTG 138245 ||| ||||| | || || |||||||| || || | || || | ||| |||| | ||| Sbjct 6580814 TGGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTG 6580873 Query 138246 TATCGAAGTGAGTAACG-CGTAAGTCGGTTTCGCCAGAAATATGTTAAACGATTGACTCT 138304 || || |||| || || |||| |||| || |||| | ||||| | |||||| | Sbjct 6580874 CATTGATGTGA-TACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATT 6580932 Query 138305 GATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAATTTTTACTTTTCATCTCCC 138364 |||||||||| || || |||||| ||||| | || | | ||| | ||||||| Sbjct 6580933 GATCGATGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCC 6580992 Query 138365 ACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCC 138424 |||| || ||| || || |||| || ||| || || || ||||| | Sbjct 6580993 ACACAGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATC 6581052 Query 138425 CGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT-GATCAAG 138483 | ||| ||||| | ||||| |||| |||||| | ||| || | || | |||| Sbjct 6581053 CATTGTTGGCAATCAATCGATTCTTCATCTCATCGCTCCACA-ATCCTCTTTCAACCAAG 6581111 Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || | || | | || | | ||| || ||||||| | || || ||| ||| Sbjct 6581112 TCCTTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAG 6581171 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||||| ||| | ||||||| ||| ||||||||||| ||||| ||||| |||| Sbjct 6581172 ATGTTCGATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGG 6581226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893860226200