Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq625 167 4e-35 seq571 118 2e-20 seq626 104 4e-16 seq476 95.1 2e-13 >seq625 Length=33334924 Score = 167 bits (184), Expect = 4e-35 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || || | | Sbjct 26504319 TGTACTTGGTGACGGCCTTGGTTCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCCGGAA 26504260 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||| || |||||||| || || ||||||| ||| || | |||||| | Sbjct 26504259 GAATCAAACGGACGGCGGTTTGAATTTCGCGGGACGAGATGGTCGATCTCTTGTTGTAGT 26504200 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || |||||| | | ||||||| |||| || ||||||||| |||||||||| Sbjct 26504199 GGGCAAGACGAGAGGCCTCAGCGGCGATGCGCTCGAACACGTCGTTGACGAACGAGTTCA 26504140 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| ||||| || ||| ||||| ||||||||||| || Sbjct 26504139 TGATGGACATGGCTTTGGAGGAGACTCCGGTGTCAGGGTGGACCTGCTTGAGTAC 26504085 Score = 163 bits (180), Expect = 4e-34 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| |||| || || || | | Sbjct 26498603 TGTACTTGGTGACAGCCTTGGTTCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCCGGAA 26498662 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||| || |||||||| || || ||||||| ||| || | |||||| | Sbjct 26498663 GAATCAAACGGACGGCGGTTTGAATTTCGCGGGACGAGATGGTCGATCTCTTGTTGTAGT 26498722 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || |||||| | | ||||||| |||| || ||||||||| |||||||||| Sbjct 26498723 GGGCAAGACGAGAGGCCTCAGCGGCGATGCGCTCGAACACGTCGTTGACGAACGAGTTCA 26498782 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| ||||| || ||| ||||| ||||||||||| || Sbjct 26498783 TGATGGACATGGCTTTGGAGGAGACTCCGGTGTCAGGGTGGACCTGCTTGAGTAC 26498837 Score = 134 bits (148), Expect = 2e-25 Identities = 173/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || || ||||||||| |||| || || || | | Sbjct 28927754 TGTACTTGGTGACAGCCTTGGTTCCTTCAGAAACGGCGTGCTTGGCAAGCTCTCCTGGAA 28927695 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||||| || || || || ||||| ||||||| ||| || |||||||| ||| Sbjct 28927694 GGATCAAACGGACAGCCGTTTGGATTTCGCGGGAAGAGATTGTCGACCGCTTGTTGTAGT 28927635 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| ||||| || || | ||||||| |||| | ||||||||| || || || Sbjct 28927634 GGGCG--AGGCGAGAAGCTTCAGCAGCGATGCGCTCGAAGACGTCGTTGACGAAGGAATT 28927577 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| ||| |||| || || ||||| || ||||||||||| Sbjct 28927576 CATGATCGACATCGCCTTGGAAGAGACTCCGGTATCAGGGTGAACTTGCTTGAGCAC 28927520 Score = 105 bits (116), Expect = 1e-16 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| || || || || || |||||||| ||| |||| ||||| || | | Sbjct 30109889 TGTATTTGGTGACAGCTTTTGTTCCTTCGGAGACGGCATGCTTGGCAAGTTCTCCTGGAA 30109948 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || |||||||| ||||| || || | || ||| |||||||| | Sbjct 30109949 GAATGAGACGAACGGCGGTTTGGATTTCACGAGATGAAATGGTGGAACGCTTGTTGTAGT 30110008 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || ||| || |||| | ||||| |||| | ||| ||||| || ||||||| Sbjct 30110009 GAGCAAGACGGGAAGCTTCGGCAGCAATGCGCTCGAAGACGTCATTGACGAAGGAGTTCA 30110068 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||| ||||| | ||| ||||| || ||| ||||| ||||| Sbjct 30110069 TGATGGACATTGCCTTGGAGGAGACTCCAGTGTCTGGGTGAACCTG 30110114 >seq571 Length=73461 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| |||||||||||| |||| || || || | | Sbjct 10868 TGTACTTGGTTACAGCCTTAGTTCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCCGGAA 10927 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || ||||| || || ||||||| ||| || | |||||| | Sbjct 10928 GGATCAAACGGACAGCGGTTTGAATTTCGCGGGATGAGATGGTCGATCTCTTGTTGTAGT 10987 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || |||| | ||||| |||| | |||||||| || ||||||| Sbjct 10988 GAGCAAGACGAGATGCTTCGGCAGCAATGCGTTCGAAGACATCGTTGACGAAAGAGTTCA 11047 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | ||| |||| || || ||||| ||||||||||| || Sbjct 11048 TGATCGACATGGCCTTGGAAGAGACTCCAGTATCAGGGTGGACCTGCTTGAGTAC 11102 >seq626 Length=20921866 Score = 104 bits (114), Expect = 4e-16 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || ||||||||||||||||| || || || ||||||||| |||| || || || | | Sbjct 16856549 TATTTGGTGACGGCCTTGGTTCCTTCAGACACGGCGTGCTTGGCAAGCTCTCCTGGAAGA 16856608 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 ||||| || || || ||||| || ||||||| ||| || |||||||| | | Sbjct 16856609 ATCAGACGAACAGCAGTCTGAATTTCGCGGGAAGAGATGGTCGAACGCTTGTTGTAGTGA 16856668 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || ||| || | |||| || |||| | ||| ||||| || ||||||||| Sbjct 16856669 GCAAGTCGAGAGGCTTCAGCAGCGATACGCTCGAAGACGTCATTGACGAAAGAGTTCATG 16856728 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 || ||||| | ||| ||| | || || ||||| || ||||| Sbjct 16856729 ATGGACATGGCTTTCGAGGAAACTCCAGTATCCGGGTGAACTTGCTT 16856775 Score = 102 bits (112), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || ||||||||||||||||| || || || ||||||||| |||| || || || | | Sbjct 16968423 TATTTGGTGACGGCCTTGGTTCCTTCAGACACGGCGTGCTTGGCAAGCTCTCCTGGAAGA 16968364 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 ||||| || || || ||||| || ||||||| ||| || |||||||| | | Sbjct 16968363 ATCAGACGAACAGCAGTCTGAATTTCGCGGGAAGAGATGGTCGAACGCTTGTTGTAGTGA 16968304 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || ||| || | |||| || |||| | ||| ||||| || ||||||||| Sbjct 16968303 GCAAGTCGAGAGGCTTCAGCAGCGATACGCTCGAAGACGTCATTGACGAAAGAGTTCATG 16968244 Query 1485652 ATCGACATCGATTT 1485665 || ||||| | ||| Sbjct 16968243 ATGGACATGGCTTT 16968230 >seq476 Length=63994 Score = 95.1 bits (104), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| |||||||| ||| |||||| || || | | Sbjct 44479 TGTATTTGGTGACGGCCTTGGTTCCCTCGGAGACGGCATGCTTGGCCAACTCTCCCGGAA 44538 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || || || || || |||| ||| || ||| ||||| Sbjct 44539 GGATGAGACGAACAGCAGTTTGAATTTCACGGGACGAGATTGTCGAGCGTTTGTTGTAAT 44598 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || || | |||| | |||| | ||||||||||||||||||| Sbjct 44599 GAGCCAAACGTGAAGCTTCAGCAGCGATTCTCTCGAAGACATCGTTGACAAACGAGTTCA 44658 Query 1485650 TGATCGACAT 1485659 |||| ||||| Sbjct 44659 TGATGGACAT 44668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916175660916935