Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq542 147 1e-30 seq549 125 5e-24 seq625 123 2e-23 >seq542 Length=114868 Score = 147 bits (162), Expect = 1e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||||| || ||||||||| ||||| ||||||| Sbjct 76452 TTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 76511 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || |||| || |||||||||||||||||||||| || |||||| ||| | | Sbjct 76512 AGAGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTG 76571 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || |||||| | || | ||| ||| |||| Sbjct 76572 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGA 76631 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || ||||||||||| ||||| || || || ||||||||||| Sbjct 76632 CCTCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCAT 76680 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| | || |||| ||||| || ||||||||| ||||| ||||| | Sbjct 75944 TTCCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 76003 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || |||| || |||||||||||||||||||||| ||||| || ||| | | Sbjct 76004 AAAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTG 76063 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || |||||| | || | || ||||||| Sbjct 76064 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGA 76123 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||||||||| || | ||||| || ||||||||||| Sbjct 76124 CTTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| || || | | | || || || |||||||||||||| Sbjct 76717 CTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAA 76776 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||||||||| | || | ||||||||||| | || || |||||| Sbjct 76777 GATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 76836 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| || || || |||| ||| ||||||||||| ||||||||||| || Sbjct 76837 CTCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGAC 76896 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 76897 GAAGATCTGCAT 76908 Score = 114 bits (126), Expect = 8e-21 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCT-GAATGTTATAGTCC 34807 ||||||| || | | || |||| ||||| ||| ||||| | | ||||| ||||| Sbjct 76908 TTCCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCG 76967 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || | |||| |||| || || ||||||||||||||||||| || |||||| ||| | Sbjct 76968 GACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGT 77027 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || || |||||| | || | || |||||| Sbjct 77028 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCG 77087 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || || |||||||| || ||||| || |||||||||||||| Sbjct 77088 ACTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCAT 77137 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| || || | | |||| || || |||||||||||||| Sbjct 77448 CTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCGAGCTGCTTTCCGGCGAA 77507 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||||||||| | || | || |||||||| | || || ||||| Sbjct 77508 GATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 77567 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| ||||| || || | ||| ||||| ||||| || | || || || Sbjct 77568 TTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGAC 77627 Query 34966 AAAGATCTGCATGAT 34980 ||||| |||||||| Sbjct 77628 GAAGATTTGCATGAT 77642 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34835 TTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTT 34894 || |||||||| || |||| |||||| ||| | || | ||||||||||| | || || Sbjct 77269 TTACCGGCGAAAATGAGTCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTG 77328 Query 34895 TGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTG 34954 |||||| | || | ||| ||| ||||| |||| || ||||||||||| ||| Sbjct 77329 GCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCCTGTG 77388 Query 34955 AGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||||||||| Sbjct 77389 AGTGTTTTGACGAAGATCTGCAT 77411 >seq549 Length=112515 Score = 125 bits (138), Expect = 5e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || | |||| |||| || ||||||||||||||||| Sbjct 111932 CTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAA 111991 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| | |||||||| ||| | || | ||||| ||||| | || || |||||| Sbjct 111992 GATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTT 112051 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| ||| || || |||| ||| ||||||||||| ||||| ||||| || Sbjct 112052 CTCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGAC 112111 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 112112 GAAGATCTGCAT 112123 Score = 105 bits (116), Expect = 4e-18 Identities = 163/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||| | ||| ||||| || ||||| || |||| Sbjct 112123 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTGGATTCCTT-TGGATGTTGTAATCCG 112181 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | |||| |||| || || ||||||||||||||||||| || |||||| || || | Sbjct 112182 ACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATC-TGTG 112240 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | |||||||||| | || || |||||| | || | ||| ||||||| Sbjct 112241 GGA-TTCCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGA 112299 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||||||||| || | || || || ||||||||||| Sbjct 112300 CTTCCAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 >seq625 Length=33334924 Score = 123 bits (136), Expect = 2e-23 Identities = 146/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || || | || |||| || ||||||||||||||||| Sbjct 31079051 CTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 31078992 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||||| |||||| ||| | || | || |||||||| | || || ||||| | Sbjct 31078991 GATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGAC--A 31078934 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || ||||||||| || | ||| || ||||| ||||| || ||||| Sbjct 31078933 TTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTCTTG 31078874 Query 34964 ACAAAGATCTGCATGA 34979 || ||||| ||||||| Sbjct 31078873 ACGAAGATTTGCATGA 31078858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690160361635