Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq542 134 1e-26 seq549 125 6e-24 seq625 95.1 9e-15 >seq542 Length=114868 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || ||||| ||||| || || || || || ||||| || |||| Sbjct 76453 TCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 76512 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || ||| |||||||| || || || | ||||||||||||||||| || || Sbjct 76513 GAGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGG 76572 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | || ||||| | || | ||||||||| ||| || Sbjct 76573 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGAC 76632 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || || || || || | ||||| || || ||||||||| Sbjct 76633 CTCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCATT 76681 Score = 131 bits (144), Expect = 1e-25 Identities = 170/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTC-TTTTTGAATGTTATAATCCG 29617 |||||| || | ||| || ||||| ||||| |||||||| |||||| ||||| || || | Sbjct 76909 TCCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGG 76968 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 | |||||| ||| || || || || || || | ||||||||||||||||| || | Sbjct 76969 ACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTG 77028 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 | || || || |||||||| ||| || | ||||| | || | ||||| ||| || Sbjct 77029 GGATTCCTTCCTTGTCTTG-AATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCG 77087 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | || || || || || || | |||||| ||||| ||||||||| Sbjct 77088 ACTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCATT 77138 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 || ||| || || | || | |||||||||||| || || || ||||| |||||||| | Sbjct 77265 TTATTTACCGGCGAAAATGAGTCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGAT 77324 Query 29700 TTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 || ||||| | || | ||||||||| ||| || |||||||| || || || || Sbjct 77325 CTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCC 77384 Query 29760 AGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||||| || || ||||||||| Sbjct 77385 TGTGAGTGTTTTGACGAAGATCTGCATT 77412 >seq549 Length=112515 Score = 125 bits (138), Expect = 6e-24 Identities = 168/229 (73%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || ||||| || || |||||||| ||| || |||| ||||||| Sbjct 112124 TCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTGGA-TGTTGTAATCCGA 112182 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || || || || || | ||||||||||||||||| | || Sbjct 112183 CAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGTGGG 112242 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | | |||| |||||||| ||| || | ||||| | || | ||||||||| || | Sbjct 112243 ATT--CCTCCTTGTCTTG-AATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGA 112299 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || || || || ||||| || ||||| || || |||||||| Sbjct 112300 CTTCCAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || || | ||| || || || || ||||| ||||| || || | Sbjct 111896 TCCTCCACGGAGACGAAGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGA 111955 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| |||||||| || || || | || || | ||||||||| || || Sbjct 111956 CAAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGG 112015 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||||||||| | || ||||| | || | |||||||| ||| || Sbjct 112016 GATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAAC 112075 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || || ||||| | || || || || ||||||||| Sbjct 112076 CTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCATT 112124 >seq625 Length=33334924 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| || || || || || ||||| ||||| || || | Sbjct 31079086 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 31079027 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| |||||||| || || || | |||| |||||||||||| || ||| Sbjct 31079026 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 31078967 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| | || | || || || || ||| Sbjct 31078966 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 31078907 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || | || || || || || ||||| Sbjct 31078906 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 31078860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216077918765