Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq542 170 4e-37 seq549 156 8e-33 seq625 145 1e-29 >seq542 Length=114868 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||||||| ||||| ||||| ||||| || || ||||| || || || || || Sbjct 75946 CCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 76005 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || ||||| ||||| || ||||| | | |||||||||||| || Sbjct 76006 AGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 76065 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||| ||||| || || || || ||||| || || || || ||| Sbjct 76066 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACT 76125 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || ||||| ||||| || || |||||||| Sbjct 76126 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 170 bits (188), Expect = 4e-37 Identities = 176/229 (77%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTC-TTTCTGTATATTATAATCAGA 82642 |||||||| | ||| ||||| ||||| ||||| ||||| ||| || || || || || || Sbjct 76910 CCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGA 76969 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | | ||| || || || || ||||| || ||||| | |||||| |||||||| || Sbjct 76970 CAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGG 77029 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| ||||||||||| || || || || ||||| || || || || || Sbjct 77030 GATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGAC 77089 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| || |||||||| || |||| || || ||||| ||||||||| Sbjct 77090 TTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCATT 77138 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | || ||||| || || ||||| ||||| || ||||| Sbjct 77413 CCTCCGCGGAGACGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 77472 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||| || || ||||| || ||||| ||||| || || ||||| || Sbjct 77473 AGAGTTCTTCCATCTTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 77532 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| || || |||||||| || |||||| || || || Sbjct 77533 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACC 77592 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| || || || || || |||||||| || || || || ||||| ||| Sbjct 77593 TCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGATT 77643 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| ||||| || || ||||| || || || || || Sbjct 76454 CCTCCTCTGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 76513 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || ||||| ||||| || ||||| | |||||| |||||||| || Sbjct 76514 AGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGG 76573 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| || || || || || || || ||| | ||| || Sbjct 76574 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACC 76633 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| ||||| | || || || || ||||||||| Sbjct 76634 TCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCATT 76681 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 76310 TTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTG 76369 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || ||| | ||| || || | ||| || ||||| || || Sbjct 76370 GCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGAGTGATAGTCTTTCCGGTG 76429 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| | || || |||||| Sbjct 76430 AGGGTCTTAATGAAAATTTGCATT 76453 >seq549 Length=112515 Score = 156 bits (172), Expect = 8e-33 Identities = 173/227 (76%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| ||||| ||||| ||||| || || || || ||||| || Sbjct 112125 CCTCCTCTGAGACGGAGAACCAAGTGGAGAGTGGATTCCTT-TGGATGTTGTAATCCGAC 112183 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||| || || || || ||||| || ||||| | |||||| ||||||| || Sbjct 112184 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGTGGG- 112242 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||| |||| ||||||||||| || || || || ||||| || ||| || || ||| Sbjct 112243 ATTCCT-CCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGACT 112301 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || ||||| || || || || |||||||| Sbjct 112302 TCCAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 >seq625 Length=33334924 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||| ||||| ||||| ||||| || || || || || || || || || Sbjct 31079087 ACCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGA 31079028 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || || || ||||| ||||| || ||||| |||||||| |||||||| || Sbjct 31079027 GAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGG 31078968 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| ||||| ||||| || || ||||| || || ||||| | || || Sbjct 31078967 AATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGAC 31078908 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || ||||| || |||| ||||| || || || ||||| Sbjct 31078907 TTCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 31078860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981818834525435