Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq542 109 5e-19 seq625 93.3 4e-14 >seq542 Length=114868 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| |||||||| || | || || ||||||||||| || Sbjct 77443 GTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCGAGCTGCTTTCCG 77502 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| | ||||||||| || ||||| ||||||||||| |||||| |||| Sbjct 77503 GCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 77562 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || || | | |||||| || | ||||| |||||| || |||| ||| Sbjct 77563 ACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGTT 77622 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 77623 TTGACGAAGATTTGCATG 77640 Score = 100 bits (110), Expect = 3e-16 Identities = 144/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTC-TTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||| || ||| || || ||||| ||| || ||| ||| | ||||| |||||||| | Sbjct 76940 GTGGATTCCTTTTTGGATGTTGTAGTCGGACAAAGTGCGACCA-TCCTCAAGCTGCTTTC 76998 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | | ||||| || || ||||| ||||||||||| ||||| || Sbjct 76999 CGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCCT 77058 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||||| | ||| || || | |||| || || |||||||| | Sbjct 77059 TGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAATGTGATCGTCTTTCCGGTCAGGG 77118 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 77119 TTTTGACAAAGATCTGCAT 77137 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | | | | ||| |||||||| ||||| | Sbjct 76484 GTCGACTCCTTCTGGATGTTGTAGTC--CGAGAGGGTACGTCCATCCTCGAGTTGCTTTC 76541 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | | ||||| || || ||||| ||||||||||| |||||| || Sbjct 76542 CGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCT 76601 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| | || || || || | || | ||| || || || || | Sbjct 76602 TGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTCTTTCCTGTGAGTG 76661 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 76662 TTTTGACGAAGATCTGCAT 76680 >seq625 Length=33334924 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||| ||||| || ||| | || || | ||||| || || || || ||||||||| Sbjct 31079014 TCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTG 31078955 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | || |||| || ||| || |||| ||| | Sbjct 31078954 TCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATA 31078895 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || || || |||||||| || ||||| || |||||| || Sbjct 31078894 GTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 31078856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416781564600