Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq625 96.9 8e-15 seq626 93.3 1e-13 >seq625 Length=33334924 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 167193 TTTTATCGAAATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCA 167252 ||||||| | || | ||||||||| || || | || || ||||||| | || Sbjct 29431623 TTTTATCAATTTACCTGGAAAGAGCACAAAAGATTCTCATCAACATTCATTACTGCTCCT 29431564 Query 167253 GCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATT 167311 |||||||||||||| | | || |||||||| || || ||||||||||| | | ||| | Sbjct 29431563 GCATTATCGAATTC-TCCACAGTAATTTGGAGCAGAGAATACAGTAACGAGTCCACGTCT 29431505 Query 167312 GAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACGTATTAC-AAGTTCAACTC 167370 ||| |||||||||||||||||||| |||| ||| | || | || | | ||| || Sbjct 29431504 TCCAAAGAATTCATAACCATCTTCAACTACTTGATGTCCTCGAACAACTATATCCAAATC 29431445 Query 167371 CTAtttttttAAGAAA 167386 | ||||||| ||| || Sbjct 29431444 C-ATTTTTTGAAGGAA 29431430 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| |||| ||||| ||||||||||||| |||| ||||||| | || Sbjct 6493424 TTCAATCGACAACCGACACTCCATAAGATGTCTATGATGGGACATAGAGTCAAAATCCTA 6493483 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 | | | || || ||| | ||| | || |||| |||||||||||||| ||| Sbjct 6493484 CCGTGGTCCACTTTCCGAATGAATTTGTCTGTCACATCGCCGTATAATGCGGATTTCGAT 6493543 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| |||||| ||||| | || ||| Sbjct 6493544 GGAGATGAGATGAATTTGCATTTGCCGCAA 6493573 >seq626 Length=20921866 Score = 93.3 bits (102), Expect = 1e-13 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 305316 ATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGG 305375 |||| |||||| ||||| |||||| | |||||||| || || || || || || ||| Sbjct 16724444 ATGATAATGATGTTGTTCTATTCAATCGTCAACCATCTCTTCACAAGATTTCAATTATGA 16724503 Query 305376 CTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGC 305435 ||| | || || | | || ||||| || || || | | |||||||||| | Sbjct 16724504 GCCATCGTGCTAAGGTTATGCCAGGGAGAACATTCCGTTTCAACGAATGTGCTTGTACTC 16724563 Query 305436 CTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 | |||||||| ||||| || ||||||||||||||| | ||| |||| || Sbjct 16724564 CGTATAATGCAGATTTCGACGGAGATGAAATGAATCTTCATTTACCACA 16724612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186802687984065