Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq542 96.9 2e-15 >seq542 Length=114868 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTC-TTTTTGTATGTTGTAATCGGA 33581 || ||||| | ||| | ||||| || |||||| || |||||| |||||||| ||||| Sbjct 76910 CCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGA 76969 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | || |||||||| || ||||| | ||||||||| | || Sbjct 76970 CAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGG 77029 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || || | | | ||| ||||||| | || | Sbjct 77030 GATTCCTTCCTTGTCTTGAATCTTGGCCTTGA-CGTTCTCAATGGTGTCGGAAGCCTCGA 77088 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||||| || || || | ||||| |||||||||||||| Sbjct 77089 CTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCAT 77137 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | ||||| || ||||| ||| || || |||||||| ||||| Sbjct 75946 CCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 76005 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||| |||||||| || |||||||| || |||||| | || Sbjct 76006 AGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 76065 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | || | ||||||| | || || Sbjct 76066 ATTCCCTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGAC 76124 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || || || || || |||||||||||| Sbjct 76125 TTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 76173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701335956800