Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq542 138 3e-27 seq549 105 2e-17 seq625 96.9 8e-15 >seq542 Length=114868 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || ||||| |||||||| |||||||| || ||| ||| Sbjct 77134 CAGATCTTTGTCAAAACCCTGACCGGAAAGACGATCACATTGGAAGTCGAGGCTTCCGAC 77075 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || |||||||| || || ||| Sbjct 77074 ACCATTGAGAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 77015 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||||||||||||| | || ||||| | |||||| |||| |||||| || Sbjct 77014 AGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACAACATC 76955 Query 206353 CAGAAA-GAGTCTACTCTTCACCTTGTT 206379 || ||| || || ||||||||| | ||| Sbjct 76954 CAAAAAGGAATCCACTCTTCACTTGGTT 76927 Score = 138 bits (152), Expect = 3e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||||||| | || |||||||| ||||| |||| ||||| |||||| || ||||| Sbjct 77625 CAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCTGATACCATCGAAAA 77566 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || |||||||| || ||| || ||||| ||||| Sbjct 77565 TGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAGAGACTCATCTT 77506 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | ||||||||||| ||| | | || ||||| ||||||| ||||| Sbjct 77505 CGCCGGAAAGCAGCTCGAAGATGGAAGAACTCTCTCTGACTACAATATCCAGAAGGAGTC 77446 Query 206364 TACTCTTCACCTTGTT 206379 ||||| || || ||| Sbjct 77445 CACTCTCCATCTCGTT 77430 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||||||||| || || ||| | || || ||| |||||| Sbjct 76677 CAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTCTGAC 76618 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || |||||||| || || ||| Sbjct 76617 ACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 76558 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||||||||||||||| | || |||||| | || | | || |||||| || Sbjct 76557 AGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACCCTCTCGGACTACAACATC 76498 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| ||||||||| | ||| Sbjct 76497 CAGAAGGAGTCGACTCTTCACTTGGTT 76471 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||||||||| || ||||| | || || ||| |||||| Sbjct 76905 CAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTTGAAGCTTCTGAT 76846 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || ||||| || ||| || Sbjct 76845 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAG 76786 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||||||||||| | || || ||||| ||| | | || ||||| || Sbjct 76785 AGACTTATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTCTCTGACTACAATATC 76726 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| ||||| || || ||| Sbjct 76725 CAGAAGGAGTCCACTCTCCATCTCGTT 76699 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || ||||| |||||||| || ||| ||| Sbjct 76169 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCCGAC 76110 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || ||||| || || ||| Sbjct 76109 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAACAA 76050 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||||||||| | || ||||| | || | |||| |||||| || Sbjct 76049 CGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAACATC 75990 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| ||||||||| | ||| Sbjct 75989 CAGAAGGAGTCGACTCTTCACTTGGTT 75963 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| || || ||||| ||||| ||||||| ||| ||||||| | ||| ||||||||||| Sbjct 77430 AACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 77489 Query 204823 CAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||||||||||| || Sbjct 77490 GAGCTGCTTTCCGGCGAAGATGAG 77513 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| || || ||||| ||||| ||||||| ||| ||||||| | ||| ||||| || || Sbjct 76699 AACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCCTC 76758 Query 204823 CAGCTGCTTTCCGGCGAAGATAAG 204846 ||||||||||||||||||||||| Sbjct 76759 AAGCTGCTTTCCGGCGAAGATAAG 76782 >seq549 Length=112515 Score = 105 bits (116), Expect = 2e-17 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || ||||| || ||||| |||||||| || ||||||| Sbjct 112345 CAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCTGAC 112286 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || || ||||| | | | ||| Sbjct 112285 ACCATTGAGAACGTCAAGGCCAAGATTCAAGACAAGGA-GGAATCCCACAGATCAG-CAA 112228 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||||||||||||| | || ||||| | |||||| | ||||||||| || Sbjct 112227 AGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGATTACAACATC 112168 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || || || ||||| ||| | ||| Sbjct 112167 CA-AAGGAATCCACTCTCCACTTGGTT 112142 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || ||||| | || || ||| |||||| Sbjct 112120 CAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAGCCTCTGAC 112061 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| ||||| ||||| || || ||| Sbjct 112060 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAGCAA 112001 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||||||||| | || ||||| | |||||| |||| |||||| || Sbjct 112000 CGTTTAATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACTTTGTCCGACTACAACATC 111941 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || ||||| || || || || ||| Sbjct 111940 CAAAAGGAGTCAACCCTCCATCTCGTT 111914 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || ||||| || ||| |||||| | ||||||||||||||| Sbjct 112492 AAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAAAGATTGATCTTCGCCGGAAAG 112433 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || ||||| ||| | | || ||||| ||||||| || || |||||||| Sbjct 112432 CAGCTTGAGGACGGAAGAACTCTCTCTGACTACAATATCCAGAAGGAATCCACTCTTCAT 112373 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 112372 TTGGTTCTTCGTCTTCG 112356 >seq625 Length=33334924 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||||||| || || |||||||| ||||||||||||||| Sbjct 31078944 AAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAAAGACTGATCTTCGCCGGAAAG 31079003 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || |||||| | ||| | |||| |||||| |||| || ||||| ||||| ||| Sbjct 31079004 CAACTCGAGGATGGACGTACTCTCTCCGACTACAACATCCAAAAGGAGTCGACTCTCCAC 31079063 Query 206374 CTTGTT 206379 | ||| Sbjct 31079064 TTGGTT 31079069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181810730517465