Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq625 89.7 5e-13 seq626 82.4 7e-11 >seq625 Length=33334924 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | ||||| ||||| |||||||||||| | ||||| ||| || Sbjct 31079069 AACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 31079010 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| || || |||| |||| || | || |||||||| || || ||||| || || Sbjct 31079009 GAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 31078950 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | ||||||| | ||| ||||||| || | || || Sbjct 31078949 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTT 31078890 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| |||||||| || | ||| || ||||||||| Sbjct 31078889 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 31078856 >seq626 Length=20921866 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 |||||||| || || ||| |||| || |||||||| || | ||||| ||||| | | Sbjct 6573472 TACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAAC 6573531 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 || || ||||| || || | |||| ||||||||||| |||||||| | || || Sbjct 6573532 ATCTGTTGTGGCCGCTCAACGACTTCCTTGTTGATCTTCAGAAGATACGAACGCTCAAGA 6573591 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || ||| | || ||||| |||| | | || | || ||| ||||||| Sbjct 6573592 GTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAATCGATGGC 6573641 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 |||||||| || || ||| |||| || |||||||| || | ||||| ||||| | | Sbjct 6579343 TACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGGCGACACGCATCAAC 6579284 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 || || ||||| || || | |||| ||||||||||| |||||||| | || || Sbjct 6579283 ATCTGTTGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAGA 6579224 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || ||| | || ||||| |||| | | || | || ||| ||||||| Sbjct 6579223 GTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAACGATGGC 6579174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607238169400