Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq542 96.9 3e-15 seq625 87.8 2e-12 >seq542 Length=114868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | |||||||| ||||||| | |||||||| || | Sbjct 77137 ATGCAGATCTTTGTCAAAACCCTGACCGGAAAGACGATCACATTGGAAGTCGAGGCTTCC 77078 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || ||| || || || || || || || |||||| Sbjct 77077 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 77018 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| || || || || |||| | | | | | ||| ||||| Sbjct 77017 CAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACAAC 76958 Query 25355 ATTCAAAAA-GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || |||||| |||||||| |||| || || | | | |||||||||| Sbjct 76957 ATCCAAAAAGGAATCCACTCTTCACTTGGTTCTCCGTCTCAGAGGAGGAA 76908 >seq625 Length=33334924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || | || || || | || || |||||||||| ||| Sbjct 31078859 CATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTC 31078918 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| |||||| | || || || || || || || || || || || ||||| Sbjct 31078919 CGATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 31078978 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| || | || ||| || |||||||| |||| | | | || ||| ||||| Sbjct 31078979 GCAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAA 31079038 Query 25354 TATTCAAAAAGAATCCAC 25371 || ||||| || || || Sbjct 31079039 CATCCAAAAGGAGTCGAC 31079056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445090700152800