Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq625 136 6e-26 seq571 100 4e-15 seq626 89.7 7e-12 >seq625 Length=33334924 Score = 136 bits (150), Expect = 6e-26 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || ||||||||||| ||||| |||| | | | |||||||| || || Sbjct 26498846 ATCTACCGTGTACTCAAGCAGGTCCACCCTGACACCG--GAGTC-TCCTCCAA--AG-CC 26498793 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| ||||||||| || |||| ||||||| | | |||||| | Sbjct 26498792 ATGTCCATCATGAACTCGTTCGTCAACGACGTGTTCGAGCGCATCGCCGCTGAGGCCTCT 26498733 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | || ||| | ||||| || || |||||||| Sbjct 26498732 CGTCTTGCCCACTACAACAAGAGATCGACCATCTCGTCCCGCGAAATTCAAACCGCCGTC 26498673 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || |||| | | || || || |||| |||||||||||| ||||| |||| Sbjct 26498672 CGTTTGATTCTTCCGGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGAACCA 26498621 Score = 136 bits (150), Expect = 6e-26 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || ||||||||||| ||||| |||| | | | |||||||| || || Sbjct 26504076 ATCTACCGTGTACTCAAGCAGGTCCACCCTGACACCG--GAGTC-TCCTCCAA--AG-CC 26504129 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| ||||||||| || |||| ||||||| | | |||||| | Sbjct 26504130 ATGTCCATCATGAACTCGTTCGTCAACGACGTGTTCGAGCGCATCGCCGCTGAGGCCTCT 26504189 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | || ||| | ||||| || || |||||||| Sbjct 26504190 CGTCTTGCCCACTACAACAAGAGATCGACCATCTCGTCCCGCGAAATTCAAACCGCCGTC 26504249 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || |||| | | || || || |||| |||||||||||| ||||| |||| Sbjct 26504250 CGTTTGATTCTTCCGGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGAACCA 26504301 Score = 104 bits (114), Expect = 3e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||||||||| || ||||| |||| | | | || ||||| | | Sbjct 28927511 ATCTACCGTGTGCTCAAGCAAGTTCACCCTGATACCG--GAGTC-TCTTCCAA---GGCG 28927564 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||| || || ||||||||| | |||| ||||||| | || || | Sbjct 28927565 ATGTCGATCATGAATTCCTTCGTCAACGACGTCTTCGAGCGCATCGCTGCTGAAGCTTCT 28927624 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || ||||||||| || ||| | ||||| ||||| || || || Sbjct 28927625 CGCCTCGCCCACTACAACAAGCGGTCGACAATCTCTTCCCGCGAAATCCAAACGGCTGTC 28927684 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| || || || |||| Sbjct 28927685 CGTTTGATCCTTCCAGGAGAGCTTGCCAAGCACGCCGTTTCTGAAGGAACCA 28927736 Score = 91.5 bits (100), Expect = 2e-12 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| | ||||| ||||||||||| || ||||| ||| | |||| ||||| | Sbjct 30110091 CTCCTCCAAGGCAATGTCCATCATGAACTCCTTCGTCAATGACGTCTTCGAGCGCATTGC 30110032 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 |||| || || || || | || ||||||||| ||| || | || || || Sbjct 30110031 TGCCGAAGCTTCCCGTCTTGCTCACTACAACAAGCGTTCCACCATTTCATCTCGTGAAAT 30109972 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||| |||||||| || || || | | || ||||| |||| ||| ||||||||||| || Sbjct 30109971 CCAAACCGCCGTTCGTCTCATTCTTCCAGGAGAACTTGCCAAGCATGCCGTCTCCGAAGG 30109912 Query 725138 CAC 725140 || Sbjct 30109911 AAC 30109909 >seq571 Length=73461 Score = 100 bits (110), Expect = 4e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || ||||||||||| ||||| || | | | | || ||||| | || Sbjct 11111 ATCTACCGTGTACTCAAGCAGGTCCACCCTGATACTG--GAGTC-TCTTCCAA---GGCC 11058 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || |||||||| | |||| ||||| | |||| || | Sbjct 11057 ATGTCGATCATGAACTCTTTCGTCAACGATGTCTTCGAACGCATTGCTGCCGAAGCATCT 10998 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | || ||| | ||||| || || ||||| || Sbjct 10997 CGTCTTGCTCACTACAACAAGAGATCGACCATCTCATCCCGCGAAATTCAAACCGCTGTC 10938 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| | | || || || |||| |||||||||||| ||||| || Sbjct 10937 CGTTTGATCCTTCCGGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGAAC 10888 >seq626 Length=20921866 Score = 89.7 bits (98), Expect = 7e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||||| ||||||||||| || ||||| ||| | |||| || |||| | || ||| Sbjct 16856738 CCATGTCCATCATGAACTCTTTCGTCAATGACGTCTTCGAGCGTATCGCTGCTGAAGCCT 16856679 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || || | || ||||||||| || ||| | ||||| || ||||| || | Sbjct 16856678 CTCGACTTGCTCACTACAACAAGCGTTCGACCATCTCTTCCCGCGAAATTCAGACTGCTG 16856619 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||||| | | || || || |||| ||||||||| || || || |||| Sbjct 16856618 TTCGTCTGATTCTTCCAGGAGAGCTTGCCAAGCACGCCGTGTCTGAAGGAACCA 16856565 Score = 89.7 bits (98), Expect = 7e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||||| ||||||||||| || ||||| ||| | |||| || |||| | || ||| Sbjct 16968234 CCATGTCCATCATGAACTCTTTCGTCAATGACGTCTTCGAGCGTATCGCTGCTGAAGCCT 16968293 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || || | || ||||||||| || ||| | ||||| || ||||| || | Sbjct 16968294 CTCGACTTGCTCACTACAACAAGCGTTCGACCATCTCTTCCCGCGAAATTCAGACTGCTG 16968353 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||||| | | || || || |||| ||||||||| || || || |||| Sbjct 16968354 TTCGTCTGATTCTTCCAGGAGAGCTTGCCAAGCACGCCGTGTCTGAAGGAACCA 16968407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177747059527730