Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq549 116 4e-21 seq542 116 4e-21 seq625 98.7 1e-15 >seq549 Length=112515 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | ||| || | ||||| || || || || |||||||| |||||||||||| Sbjct 111896 TCCTCCACGGAGACGAAGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGA 111955 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| || || ||||| || || || || || || ||||| |||||||| || || Sbjct 111956 CAAAGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGG 112015 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| ||||| || || ||||| || | ||||| || | ||| || Sbjct 112016 GATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAAC 112075 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || || || | ||| || ||||| || |||||| Sbjct 112076 CTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCATT 112124 Score = 100 bits (110), Expect = 3e-16 Identities = 164/230 (71%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CG 134543 ||||||||||||| || | || | ||| || ||||||||| |||| |||||||| | || Sbjct 112123 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTGGATTCC-TTTGGATGTTGTAATCCG 112181 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| ||| || || || ||||| || || || || ||||| | |||||||| | Sbjct 112182 ACAA-AGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATC-TGT 112239 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || |||||||| || ||||| || | ||||| || | || Sbjct 112240 GGGATTCC-TCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCG 112298 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || ||||| || || || |||||||| ||||| || ||||| Sbjct 112299 ACTTCCAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 >seq542 Length=114868 Score = 116 bits (128), Expect = 4e-21 Identities = 165/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTT-GAATGTTGTAGTCG 134543 ||||||||||||| || | || | ||| || ||||||||||||| | |||||||||||| Sbjct 76908 TTCCTCCTCTGAGACGGAGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCG 76967 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| || || || ||||| || || || || ||||| | |||||||| || Sbjct 76968 GACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGT 77027 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || |||||||| || ||||| || | |||||||| | || Sbjct 77028 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCG 77087 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | || || || || ||||| | ||||| || || || |||||| Sbjct 77088 ACTTCCAATGTGATCGTCTTTCCGGTCAGGGTTTTGACAAAGATCTGCATT 77138 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | || | ||| || || || ||||| || ||||||||||| Sbjct 76452 TTCCTCCTCTGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 76511 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || ||||| || || || || || ||||| | |||||||| || | Sbjct 76512 AGAGGGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTG 76571 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| || | ||||| || | ||| | Sbjct 76572 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGA 76631 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||||||||| || || || | ||||| ||||| || |||||| Sbjct 76632 CCTCAAGAGTAATGGTCTTTCCTGTGAGTGTTTTGACGAAGATCTGCATT 76681 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| | || | || | ||| || || || ||||| || |||||||||||| Sbjct 75944 TTCCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 76003 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||| || || || || || || || || || |||||||| || ||||| || | Sbjct 76004 AAAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTG 76063 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || ||||| || || ||||| || | |||||||| | || | Sbjct 76064 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGA 76123 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || ||||| || || || ||||| || ||||| || ||||| Sbjct 76124 CTTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 >seq625 Length=33334924 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || | ||| || || || |||||||| |||||||||||| Sbjct 31079086 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 31079027 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || ||||| || || || || || |||| | |||||||| || || Sbjct 31079026 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 31078967 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||||| || | || ||||| | || || Sbjct 31078966 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 31078907 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || ||||| || | ||| || ||||| |||||||| Sbjct 31078906 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 31078860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505394198875800