Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq626 165 1e-35 >seq626 Length=20921866 Score = 165 bits (182), Expect = 1e-35 Identities = 469/718 (65%), Gaps = 2/718 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| || || |||||||| || || | ||| || || || ||| ||||||| || Sbjct 6579878 TTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGCATGGGCACATCAGCGA 6579819 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | | ||| | || || || ||||| || || || || | ||| ||||| | || Sbjct 6579818 CCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCACCCAGAGAGCCAGGAA 6579759 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 ||||| | | | | ||||| || || || || |||| ||| ||||| | Sbjct 6579758 CAGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGAAGAGCGACGAACTCGAA 6579699 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 | ||| | |||||||| || || || || || | |||| || || || |||||||| Sbjct 6579698 GACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCCTGGGCGCTTGTTTCCTCC 6579639 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 |||||| | || | || ||||| || ||||| | |||||||| || | ||||| || Sbjct 6579638 CTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCATCGGGATGAGCCCATTGGA 6579579 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 | ||||| ||||| | ||| | |||| | |||||||| || | || || Sbjct 6579578 AGTTCCATTGGTTCCGGCAATGACAGATCCTGTAGCGCGAATCTTGTGGACGTTGAGTCC 6579519 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 |||||||| || | || ||||| |||||||| | ||||| || || || || || Sbjct 6579518 AATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCAAGGTATCGTAGATTCCGAG 6579459 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 || ||| || |||| | || || || || ||||| || | | ||||| Sbjct 6579458 AATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACATCTGTGGGCGACATGTTCC 6579399 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 | || || | || || || || || || | || || || | ||||||||| || Sbjct 6579398 AGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCTCCGACATCAGATTGTACGT 6579339 Query 70056 TTCAATAGCTGATTCTAT-ATCCCACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 || || || | || || || | | | ||||| || || ||||||||||||||||| | Sbjct 6579338 CTCGATGGCAGCTTGAATGTTCTCTCCG-TGAATACCGATGGCGACACGCATCAACATCT 6579280 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 | || || || || || || || || || |||| || || || || ||||| | Sbjct 6579279 GTTGTGGCCGCTCAACGACTTCTTTGTTGATCTTCAGAAGATACGAACGCTCAAGAGTCT 6579220 Query 70175 TAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || || || || |||| ||| |||| | || |||| || |||| || || || Sbjct 6579219 TGAATCCGAAGTAAGTGTAGGAATAGTCACGATCATAAACGATGGCAGAGTTCAGCTT 6579162 Score = 123 bits (136), Expect = 3e-23 Identities = 282/421 (67%), Gaps = 5/421 (1%) Strand=Plus/Plus Query 68398 GGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGC 68457 || || ||||| | |||||||| || || || || || |||||||||| || ||| Sbjct 6580815 GGCTTCGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGC 6580874 Query 68458 ATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGA 68517 || ||| | || || || || | ||| ||||| || || | |||||| |||| Sbjct 6580875 ATTGATGTGATACCGGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGA 6580934 Query 68518 TCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTC-TTTTGAGGAATTTCCCA 68576 |||||||| || || | ||| || ||||| | || || ||| ||||| | || ||||| Sbjct 6580935 TCGATGAATGCACCACGATCAGCAGCCATCTCGATGAT-CTCTTTTTGTGATATCTCCCA 6580993 Query 68577 AATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCC 68633 | ||| | | | |||||||||||||| | | | | || ||||| ||||| Sbjct 6580994 CACAGTGCGGTACAGTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGATCC 6581053 Query 68634 ACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAAC 68693 | | || || | | |||||| |||||||| |||||||| ||| || || | Sbjct 6581054 ATTGTTGGCAATCAATCGATTCTTCATCTCATCGCTCCACAATCCTCTTTCAACCAAGTC 6581113 Query 68694 TCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAAT 68753 | || | || ||||| || || || || || || || | || | |||| ||| || Sbjct 6581114 CTTCAGCATGTGTGGATTGACAATCTGGAAGTCACCGGAGAGAACACGTCGAGAGTAGAT 6581173 Query 68754 ATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGT 68813 || || ||||| || | || || || ||||| |||||||||||||| || || || Sbjct 6581174 GTTCGATGTGTATGGCTCAATCGACTCGTTGTTTCCGAGAATTTGAGCAGTGGAGGCCGT 6581233 Query 68814 T 68814 | Sbjct 6581234 T 6581234 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||| ||||| || ||||| ||| |||||| ||||| || | || | |||| Sbjct 3164628 CCAAATTCTCATTGACAATTCCGTCAGAAGCGGCGAAAAAGGCGAGAACTCGAGAGATAA 3164569 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 | || | |||||| ||| || | ||| || || ||||| ||| | ||| |||| Sbjct 3164568 AGTACTGCTCATCGCCGTTCATCTTCTCCCAATCGTTCATATCCTTTCCAAGATCAACTT 3164509 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 |||| | ||||||||||| || | ||||| || || | | ||| |||||| ||| | Sbjct 3164508 CTTCGACAGTCCAAAACGAGGCGACAGCCTTCTTATAGAACTGCCAAATATCATGATGTC 3164449 Query 40179 GTATTGGAAAAATAACAAATCTATT 40203 | ||| ||||| ||||||| ||| Sbjct 3164448 TCAGTGGGAAAATCACAAATCGATT 3164424 Score = 87.8 bits (96), Expect = 2e-12 Identities = 173/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| ||||| ||| ||||| || ||||||||||| || || || || || Sbjct 3165416 TGACATTACTCCTGGACGTTGATATTCGGAGACACGTTTCTCGAAGAAGTTGGTCTTTCC 3165357 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429 || | || || || |||||||| ||||| || || | | || || ||| | | | Sbjct 3165356 GTCGATCGAAATGTTCTCCATGAAGTCAAATGGGTTCTTGACTTTGTACAGTTTGTCACA 3165297 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 ||| | ||| | ||| ||| || ||||| || |||||| ||||| ||| Sbjct 3165296 TCCGAGCTCTTGGAGCAAATGATCGGCGACAAACTCAATGTATTGGGACATCAGACGACA 3165237 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 ||||||||| || | | ||||| |||||||| || || || |||| ||| ||| || Sbjct 3165236 ATTCATTCCGATCATATCGACTGGAAGAGCCTCTGTGAGGAATTCTTGTTCAATGGTGAC 3165177 Query 39550 GGCCTCTGTTATTATC 39565 ||| ||| | || ||| Sbjct 3165176 GGCGTCTTTGATGATC 3165161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903090070600