Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq626 84.2 2e-11 >seq626 Length=20921866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44344 AGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGG 44403 ||| || || | || ||||||||||| | ||| || | || || || | || || Sbjct 3165170 AGACGCCGTCACCATTGAACAAGAATTCCTCACAGAGGCTCTTCCAGTCGATATGATCGG 3165229 Query 44404 AATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGA 44463 ||||||| | | ||||| |||||| ||||| | | || |||| ||| || || Sbjct 3165230 AATGAATTGTCGTCTGATGTCCCAATACATTGAGTTTGTCGCCGATCATTTGCTCCAAGA 3165289 Query 44464 ACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTC 44523 || || || || |||| || | || | ||||| ||||| || ||||| || ||||| Sbjct 3165290 GCTCGGATGTGACAAACTGTACAAAGTCAAGAACCCATTTGACTTCATGGAGAACATTTC 3165349 Query 44524 GTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCG 44574 | | || || || || ||||| || || ||||| || |||||||| || Sbjct 3165350 GATCGACGGAAAGACCAACTTCTTCGAGAAACGTGTCTCCGAATATCAACG 3165400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452778743325