Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq626 134 2e-26 seq625 100 4e-16 >seq626 Length=20921866 Score = 134 bits (148), Expect = 2e-26 Identities = 407/626 (65%), Gaps = 11/626 (2%) Strand=Plus/Minus Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTG 111523 |||||| || || ||||||||||| || ||| | || |||| ||| ||||| || | Sbjct 6579894 ACTTTGCATAAAGAGCTTCAAACTCTTCTCCC-CAGCAGTCGTCGAGTCCTGGGCACTCG 6579836 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 ||| || | || ||||| | | ||| ||| || ||||||||||| ||||| || Sbjct 6579835 CATGGGCACATCAGCGACCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGC 6579776 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 | ||| || | || ||||| | | || ||||||| ||| ||| || Sbjct 6579775 ACCCAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGA 6579716 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | | | |||||| | || ||| ||||||||||||||||| |||| |||| || ||| Sbjct 6579715 AGAGCGACGAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCTCC- 6579657 Query 111704 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 | | ||| || | |||| ||||| || |||||| ||| | || |||||| Sbjct 6579656 --TGGGCGCTTGTTTCCTCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGC 6579599 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817 || || || | |||| || ||||| || || ||| |||| | || | Sbjct 6579598 ATCGGGATGAGCCCATTGGAAGTTCCATTGGTTCCGGCAATGACAGATCCTGTAGCGCGA 6579539 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | |||| || | ||||| || || || | ||| ||||| | ||||||| | | Sbjct 6579538 ATCTTGTGGACGTTGAGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTC 6579479 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 | || | ||||| ||| || || ||||| | | | || |||||||| ||| Sbjct 6579478 AAGGTATCGTAGATTCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGAC 6579419 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 ||||| || | ||| |||| |||||||| ||||| | || || | | | Sbjct 6579418 ATCTGTGGGCGACATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGC 6579359 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | |||||| | ||| ||||| | | ||| | ||||| || ||||| || ||||| Sbjct 6579358 TCCGACATCAGATTGTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATG 6579299 Query 112058 GCGACCCGCATGAACATGTACTGTGG 112083 ||||| ||||| ||||| | ||||| Sbjct 6579298 GCGACACGCATCAACATCTGTTGTGG 6579273 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || ||||||||||| | |||||| |||| | ||||| || | || | Sbjct 6571289 TAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGATGTGATACCG 6571348 Query 110429 GACATCGTTGGACTTT-CCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 | | | | | | ||| |||| || ||| | |||| ||| || ||||| || Sbjct 6571349 G-CGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGATGAATGCACC 6571407 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA-ATTTCCCAAACTGTGCGATAGA 110546 || | || ||||| || |||| |||||| | | | || ||||| || ||||| || | Sbjct 6571408 ACGATCAGCAGCCATCTCGATGATCTCCTTC-TGTGATATCTCCCACACAGTGCGGTACA 6571466 Query 110547 GATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589 | | |||||||||||||||||| | | ||| ||||| || || Sbjct 6571467 GTTCCTTGATATCATCTGGGATTCCGGCGATGTTCTGAATTGA 6571509 >seq625 Length=33334924 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 182697 TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACC 182756 || || ||||||||||| |||||||| | |||||||| ||||| | |||||| ||||| Sbjct 1428150 TTTCCACGAAGTGGGAAGACACCGTACTTGTCACGACCGACGACTGCGAGACCAGCAACT 1428209 Query 182757 GCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCC 182816 || | ||||| || ||||| ||||| || | ||| ||||| || || ||| | | Sbjct 1428210 GCCAAAGTTTTAGCAGAATCTCCCTCAGTAAGAATCAGAGTGCAATTCTGAGAATTTTTA 1428269 Query 182817 GTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACC 182854 || ||||| | ||| ||||| || | || || ||||| Sbjct 1428270 GTTCCCGCATCGTTAGCGTCCTCGAGTTTCGGGATACC 1428307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026779484000