Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq626 113 6e-20 seq625 84.2 3e-11 >seq626 Length=20921866 Score = 113 bits (124), Expect = 6e-20 Identities = 401/625 (64%), Gaps = 9/625 (1%) Strand=Plus/Minus Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 |||||| || || |||||||||||||| ||| | || ||| ||||| || Sbjct 6579894 ACTTTGCATAAAGAGCTTCAAACTCTTCTCCCCAGCAGTCGTCGAGTCCTGGGCACTCGC 6579835 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 |||||| | || ||||| | | | | ||| || ||||||||||||||||| || | Sbjct 6579834 ATGGGCACATCAGCGACCAATCCTGATCTTTCTCGACGCGCTTCATGAAGAGGTCCGGCA 6579775 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 |||||| ||| ||| ||||| ||| || | ||||| || || || | Sbjct 6579774 CCCAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGACCGGTGTTCTTGCGAA 6579715 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 | | || || | || ||| |||||||| || || ||||| | |||| | | ||| Sbjct 6579714 GAGCGACGAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAG-CTCCT 6579656 Query 119179 TACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 | || || |||| | ||||| | || ||| ||| | |||||||||| Sbjct 6579655 G--GGCGCTTGTTTCCTCCCTGATCAACATAACGAGCTGTGTTGTTGTAGACACGAAGCA 6579598 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 119292 | || |||| |||| ||| ||||| || || ||| ||| | || | | Sbjct 6579597 TCGGGATGAGCCCATTGGAAGTTCCATTGGTTCCGGCAATGACAGATCCTGTAGCGCGAA 6579538 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | ||||| || | ||||| || || || | ||| ||||| | || |||| | | | Sbjct 6579537 TCTTGTGGACGTTGAGTCCAATTCCTCCGGCACTCTTCGAGATGAGAGCACACTGCTTCA 6579478 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 | ||||||| || ||||| || | | ||| || |||||||| ||||| Sbjct 6579477 AGGTATCGTAGATTCCGAGAATCGAATCCTCGCTCATTGTGAGCAGGAAGCACGACGACA 6579418 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTT 119472 | || || | ||| |||| ||||||||||||||| | || || | | | | Sbjct 6579417 TCTGTGGGCGACATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATGCGTCATGTATCGCT 6579358 Query 119473 GGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCG 119532 |||||| | ||| ||||| | | | || |||||| || |||||||||||||| | Sbjct 6579357 CCGACATCAGATTGTACGTCTCGATGGCAGCTTGAATGTTCTCTCCGTGAATACCGATGG 6579298 Query 119533 AGACCCGCATAAACATGTATTGGGG 119557 ||| ||||| ||||| | ||| || Sbjct 6579297 CGACACGCATCAACATCTGTTGTGG 6579273 >seq625 Length=33334924 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 179955 CTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAAC 180014 ||| ||||| || ||||| |||||||| | |||||||| || || | |||||||||||| Sbjct 1428149 CTTTCCACGAAGTGGGAAGACACCGTACTTGTCACGACCGACGACTGCGAGACCAGCAAC 1428208 Query 180015 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGC 180074 ||| | || || || ||||| ||||| || | || || || || || ||| | | Sbjct 1428209 TGCCAAAGTTTTAGCAGAATCTCCCTCAGTAAGAATCAGAGTGCAATTCTGAGAATTTTT 1428268 Query 180075 CGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACC 180113 || || || | ||| ||||| || | || || ||||| Sbjct 1428269 AGTTCCCGCATCGTTAGCGTCCTCGAGTTTCGGGATACC 1428307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430059257400