Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq626 147 3e-30 seq625 93.3 5e-14 >seq626 Length=20921866 Score = 147 bits (162), Expect = 3e-30 Identities = 412/627 (66%), Gaps = 13/627 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||||| ||||| || |||||||||||||| || || ||||| | ||| | Sbjct 6579273 CCACAACAGATGTTGATGCGTGTCGCCATCGGTATTCACGGAGAGAACATTCAAGCTGCC 6579332 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| | |||||| | | | | || || | ||||| |||||| Sbjct 6579333 ATCGAGACGTACAATCTGATGTCGGAGCGATACATGACGCATGCTTCCCCAACTCTCTTC 6579392 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || |||| ||| | || || ||||| |||||||| || | | | ||||| Sbjct 6579393 AACTCTGGAACATGTCGCCCACAGATGTCGTCGTGCTTCCTGCTCACAATGAGCGAGGAT 6579452 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || ||| ||||| | || | | | ||||||| | ||||| ||| | || || Sbjct 6579453 TCGATTCTCGGAATCTACGATACCTTGAAGCAGTGTGCTCTCATCTCGAAGAGTGCCGGA 6579512 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 || ||||| | || |||| | | | || | |||| ||| || || ||| Sbjct 6579513 GGAATTGGACTCAACGTCCACAAGATTCGCGCTACAGGATCTGTCATTGCCGGAACCAAT 6579572 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 || || |||| | || || |||||||| || | ||| |||||| || ||||| Sbjct 6579573 GGAACTTCCAATGGGCTCATCCCGATGCTTCGTGTCTACAACAACACAGCTCGTTATGTT 6579632 Query 104582 AATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 |||| | || ||| | | ||| || |||| |||| ||||||||||||||| Sbjct 6579633 GATCAGGGAGGAAACAAGCGCCCA---GGAGCTTTCGCCATCTACCTTGAGCCATGGCAC 6579689 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || ||| || | |||||| | | | || ||| ||| || |||| ||| ||| Sbjct 6579690 GCCGATGTCTTCGAGTTCGTCGCTCTTCGCAAGAACACCGGTCCAGAAGAGGAGCG-TGC 6579748 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 || ||||| ||| ||||||||| | || || |||||||||||| | || ||| | Sbjct 6579749 TCGTGATCTGTTCCTGGCTCTCTGGGTGCCGGACCTCTTCATGAAGCGCGTCGAGAAAGA 6579808 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTG 104813 | ||||||| || | || ||| | || || || ||| ||| ||| | ||| | Sbjct 6579809 TCAGGATTGGTCGCTGATGTGCCCATGCGAGTGCCCAGGACTCGACGACTGCTG-GGGAG 6579867 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGT 104840 | ||||||||||| ||||| |||||| Sbjct 6579868 AAGAGTTTGAAGCTCTTTATGCAAAGT 6579894 Score = 98.7 bits (108), Expect = 1e-15 Identities = 223/335 (67%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 |||| |||||||||| |||||||| ||||||||||| |||| ||| ||| Sbjct 6580184 CAAATCGAGACTGGTCTTCCATACATCACCTACAAAGACGCTGCCAACCGGAAGTCGAAT 6580243 Query 104969 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACA 105028 || ||||| | || |||||| |||| |||||||| || || ||| |||| | | Sbjct 6580244 CAGCAGAATCTCGGAACCATCAAGTGTTCGAATCTCTGCACCGAGATCATGGAGTACTCT 6580303 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 105088 | ||| ||| || ||||| || || || || || |||||| || | || | Sbjct 6580304 GCTCCAGACGAGGTCGCAGTGTGCAATCTTGCTTCGATTGCTCTCAACAGATTCGTCACT 6580363 Query 105089 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148 | ||| |||| || || |||| |||||| ||| ||||| ||| | || | | Sbjct 6580364 GCCGAG---AAGAAGTTCGACTATGCCAAACTCGCCGAGGTTACCAAAGTGATAACGAGA 6580420 Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 105208 || || |||| | || ||| || | ||||| || ||| || || || || || Sbjct 6580421 AATCTGAACAAGATCATCGATGTCAACTACTACCCAGTAGAGGAGGCCCGCAACTCGAAC 6580480 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGG 105243 ||| | || || ||||| ||||| |||||||| || Sbjct 6580481 ATGCGTCATCGCCCAATCGGTCTTGGTGTTCAAGG 6580515 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 105503 CGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 105562 || |||||||| ||||||||||||||||||||||||||||| || ||||| | || || Sbjct 6565025 CGCAACAGTCTGCTCATGGCTCCAATGCCAACAGCCTCCACTGCCCAAATTCTCGGAAAC 6564966 Query 105563 AATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || | | |||| || || || |||||||||| Sbjct 6564965 AACAAGTCGATTGAGCCATATACATCGAACATCTA 6564931 >seq625 Length=33334924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 169348 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGAC 169407 ||| |||||||| |||||||||||||| | |||||||| ||||| | |||||| || || Sbjct 1428149 CTTTCCACGAAGTGGGAAGACACCGTACTTGTCACGACCGACGACTGCGAGACCAGCAAC 1428208 Query 169408 TGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGC 169467 ||| | ||| || || || || ||||| || | || || || || || ||| | | Sbjct 1428209 TGCCAAAGTTTTAGCAGAATCTCCCTCAGTAAGAATCAGAGTGCAATTCTGAGAATTTTT 1428268 Query 169468 CGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 169506 || ||||| | ||| || || || | ||| || ||||| Sbjct 1428269 AGTTCCCGCATCGTTAGCGTCCTCGAGTTTCGGGATACC 1428307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255951644600