Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq626 178 1e-39 >seq626 Length=20921866 Score = 178 bits (196), Expect = 1e-39 Identities = 384/571 (67%), Gaps = 10/571 (2%) Strand=Plus/Minus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||||||| ||||||||||| ||| |||| || ||||| || || | Sbjct 6579850 AGTCCTGGGCACTCGCATGGGCACATCAGCGACCAATCCTGATCTTTCTCGACGCGCTTC 6579791 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 |||||||||||||| | ||| || ||| ||| || || || |||| ||| || | | Sbjct 6579790 ATGAAGAGGTCCGGCACCCAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTC-TGG 6579732 Query 79444 CCCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || | |||| || || ||| || || | || ||||||||||| ||||| || || Sbjct 6579731 ACCGGTGTTCTTGCGAAGAGCGACGAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTA 6579672 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 ||||||||| | || ||||||| || ||||| | || || || || |||||||| Sbjct 6579671 GATGGCGAAAGCTCCTGGGCGCTTGTTTCCTCCCTGATCAACATAACGAGCTGTGTTGTT 6579612 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGT 79622 | | || || ||||| || | || || | || || || || ||| || | Sbjct 6579611 GTAGACACGAAGCATCGGGATGAGCCCATTGGAAGTTCCATTGGTTCCGGCAATGACAGA 6579552 Query 79623 ACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 || | || ||||| || | || || ||| || || |||| | ||| |||||| | Sbjct 6579551 TCCTGTAGCGCGAATCTTGTGGACGTTGAGTCCAATTCCTCCGGCACTCTTCGAGATGAG 6579492 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 || |||| ||| | || |||||||| || ||||| || || |||| | || ||| Sbjct 6579491 AGCACACTGCTTCAAGGTATCGTAGATTCCGAGAATCGAATCCTCGCTCATTGTGAGCAG 6579432 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTG 79802 |||||| ||||||||||||| || || | ||||||||| || || | || || Sbjct 6579431 GAAGCACGACGACATCTGTGGGCGACATGTTCCAGAGTTGAAGAGAGTTGGGGAAGCATG 6579372 Query 79803 CGTGAAGAACTTTTGGCT----CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGT 79858 ||| | | | | ||| |||||||| ||||||||| || | | | || | Sbjct 6579371 CGTCATG----TATCGCTCCGACATCAGATTGTACGTCTCGATGGCAGCTTGAATGTTCT 6579316 Query 79859 CGCCGTGGATGCCGACCGCGACGCGCATGAA 79889 | ||||| || |||| ||||| ||||| || Sbjct 6579315 CTCCGTGAATACCGATGGCGACACGCATCAA 6579285 Score = 123 bits (136), Expect = 3e-23 Identities = 337/516 (65%), Gaps = 0/516 (0%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| | |||||| || | | | ||||| || | || || || ||||| Sbjct 6579335 CGAGACGTACAATCTGATGTCGGAGCGATACATGACGCATGCTTCCCCAACTCTCTTCAA 6579394 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 | | || || ||| ||||||||| || ||||| | | |||| || || Sbjct 6579395 CTCTGGAACATGTCGCCCACAGATGTCGTCGTGCTTCCTGCTCACAATGAGCGAGGATTC 6579454 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| || |||||||| || | ||| |||| || | |||||| ||| | |||| || Sbjct 6579455 GATTCTCGGAATCTACGATACCTTGAAGCAGTGTGCTCTCATCTCGAAGAGTGCCGGAGG 6579514 Query 19345 TATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG 19404 || || || || | || || || | | || | || || || || || Sbjct 6579515 AATTGGACTCAACGTCCACAAGATTCGCGCTACAGGATCTGTCATTGCCGGAACCAATGG 6579574 Query 19405 AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAA 19464 | || | || || |||| ||||| || |||| ||||||||| || | || || | Sbjct 6579575 AACTTCCAATGGGCTCATCCCGATGCTTCGTGTCTACAACAACACAGCTCGTTATGTTGA 6579634 Query 19465 CCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGA 19524 ||||| || ||| ||| || | |||||||||||||| |||||||||||||| || Sbjct 6579635 TCAGGGAGGAAACAAGCGCCCAGGAGCTTTCGCCATCTACCTTGAGCCATGGCACGCCGA 6579694 Query 19525 CGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGA 19584 ||| | || ||| ||| || ||| |||| ||| || ||| ||| ||| || Sbjct 6579695 TGTCTTCGAGTTCGTCGCTCTTCGCAAGAACACCGGTCCAGAAGAGGAGCGTGCTCGTGA 6579754 Query 19585 CCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGA 19644 || ||| ||| | ||| | |||||||| |||||| || || ||||| || | || Sbjct 6579755 TCTGTTCCTGGCTCTCTGGGTGCCGGACCTCTTCATGAAGCGCGTCGAGAAAGATCAGGA 6579814 Query 19645 ATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 ||| ||||||||||| ||| ||||| || || Sbjct 6579815 TTGGTCGCTGATGTGCCCATGCGAGTGCCCAGGACT 6579850 Score = 111 bits (122), Expect = 2e-19 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCAT--AC 78247 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| | Sbjct 6571280 GTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGAT 6571339 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 || | | ||| ||||| || |||| ||||||||| || || || || |||| Sbjct 6571340 GTGATACC--GGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGA 6571397 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | ||||| || || || ||||| ||||||| | ||| || | |||||||| | | Sbjct 6571398 TGAATGCACCACGATCAGCAGCCATCTCGATGATCTCCTTCTGTGATATCTCCCACACAG 6571457 Query 78368 TCCGGTA 78374 | ||||| Sbjct 6571458 TGCGGTA 6571464 Score = 111 bits (122), Expect = 2e-19 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCAT--AC 78247 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| | Sbjct 6580821 GTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATTGAT 6580880 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 || | | ||| ||||| || |||| ||||||||| || || || || |||| Sbjct 6580881 GTGATACC--GGCGTAGCTCGGCTTGGCCATATGGATGTTGAGTGATTGAGATTGATCGA 6580938 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | ||||| || || || ||||| ||||||| | ||||| | |||||||| | | Sbjct 6580939 TGAATGCACCACGATCAGCAGCCATCTCGATGATCTCTTTTTGTGATATCTCCCACACAG 6580998 Query 78368 TCCGGTA 78374 | ||||| Sbjct 6580999 TGCGGTA 6581005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520240387600