Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq626 183 3e-41 >seq626 Length=20921866 Score = 183 bits (202), Expect = 3e-41 Identities = 388/573 (68%), Gaps = 12/573 (2%) Strand=Plus/Plus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTA 53250 || ||||| |||||| | ||||| ||||| || || | || || || | |||||||| Sbjct 6579285 TTGATGCGTGTCGCCATCGGTATTCACGGAGAGAACATTCAAGC-TGCCATCGAGACGTA 6579343 Query 53251 CGACTTAATG----AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTG 53306 | | | ||| ||| | ||| | ||||| || | ||||| || |||||| ||| Sbjct 6579344 CAATCTGATGTCGGAGCGA----TACATGACGCATGCTTCCCCAACTCTCTTCAACTCTG 6579399 Query 53307 GTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCG 53366 | || || ||| ||||||||| ||||||||| | | |||| || || ||||| Sbjct 6579400 GAACATGTCGCCCACAGATGTCGTCGTGCTTCCTGCTCACAATGAGCGAGGATTCGATTC 6579459 Query 53367 ACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCG 53426 ||| |||||||| || | ||| ||||||| | |||||| ||| | | || || || | Sbjct 6579460 TCGGAATCTACGATACCTTGAAGCAGTGTGCTCTCATCTCGAAGAGTGCCGGAGGAATTG 6579519 Query 53427 GTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | || || | || | || || | || | || || || || || Sbjct 6579520 GACTCAACGTCCACAAGATTCGCGCTACAGGATCTGTCATTGCCGGAACCAATGGAACTT 6579579 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || |||| || | || ||||| || |||| ||||||||| || || || || | |||| Sbjct 6579580 CCAATGGGCTCATCCCGATGCTTCGTGTCTACAACAACACAGCTCGTTATGTTGATCAGG 6579639 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 | || |||||| || | |||||||||||||| ||||| ||||||||||| | Sbjct 6579640 GAGGAAACAAGCGCCCAGGAGCTTTCGCCATCTACCTTGAGCCATGGCACGCCGATGTCT 6579699 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTG 53665 | ||||| ||| || || ||| ||| |||||| ||| ||| ||||| ||| Sbjct 6579700 TCGAGTTCGTCGCTCTTCGCAAGAACACCGGTCCAGAAGAGGAGCG-TGCTCGTGATCTG 6579758 Query 53666 TTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 || ||||| ||| | ||||||||||||||| | || ||||| || |||| ||| Sbjct 6579759 TTCCTGGCTCTCTGGGTGCCGGACCTCTTCATGAAGCGCGTCGAGAAAGATCAGGATTGG 6579818 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCTC 53758 | ||||||||||| ||||||||| || ||| Sbjct 6579819 TCGCTGATGTGCCCATGCGAGTGCCCAGGACTC 6579851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211451267000