Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq542 116 2e-21 seq549 87.8 1e-12 >seq542 Length=114868 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | ||||| || ||||| |||||| || ||||| || || ||| Sbjct 75946 CCTCCTCTCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 76005 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || |||||||| || ||||| || || ||||| ||||| || || || Sbjct 76006 AGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 76065 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| |||| || | || ||| | ||| ||||| ||| || Sbjct 76066 ATTCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGAC 76124 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || || || || || || |||||||| Sbjct 76125 TTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||||||| |||||| || || || || || || || |||| Sbjct 76691 AGACGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTT 76750 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || ||||| || || | | ||| ||||| || || | ||||||| Sbjct 76751 CCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCC 76810 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 76811 TTGTCTTGGATCTT 76824 >seq549 Length=112515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| |||||| ||||| || || || || || || Sbjct 112350 CCTCCACGAAGACGAAGAACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCAGAG 112409 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| |||| ||||| || || ||||| || || || | || ||||| || || Sbjct 112410 AGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGG 112469 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||||| |||||| Sbjct 112470 ATTCCCTCCTTGTCTTGGATCTT 112492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727049214945