Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq542 145 7e-30 seq549 134 1e-26 seq625 131 1e-25 >seq542 Length=114868 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | || || | ||||| || | ||| Sbjct 76172 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCC 76113 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || |||||||| || || || ||||| |||||| Sbjct 76112 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 76053 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||| || ||| | || || || ||| ||||||| |||||| Sbjct 76052 CAACGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAAC 75993 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||||| | |||||| | || || || Sbjct 75992 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTCCGTTTGAGAGGAGGAAT 75943 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||||||||| || ||| | || Sbjct 76680 ATGCAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTCT 76621 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || |||||||| ||||| || ||||| ||||| Sbjct 76620 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 76561 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||| || ||| | || || | ||| | || || |||||| Sbjct 76560 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACCCTCTCGGACTACAAC 76501 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 || || ||||||||||| | || |||||| | ||| Sbjct 76500 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGT 76465 Score = 122 bits (134), Expect = 8e-23 Identities = 158/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||||||| ||| | || || | ||||| || | ||| Sbjct 77137 ATGCAGATCTTTGTCAAAACCCTGACCGGAAAGACGATCACATTGGAAGTCGAGGCTTCC 77078 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 77077 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 77018 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||| || || | || || || || | ||||| |||||| Sbjct 77017 CAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACAAC 76958 Query 27168 ATTC-AAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 || | ||||||| || || | || |||||| | ||| Sbjct 76957 ATCCAAAAAGGAATCCACTCTTCACTTGGTTCTCCGT 76921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||||||||| || ||| | || Sbjct 77411 ATGCAGATCTTCGTCAAAACACTCACAGGAAAGACCATTACTCTTGAGGTCGAAGCCTCT 77352 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || |||||||| || || || ||||| ||||| Sbjct 77351 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAG 77292 Query 27108 CAGCGTTTAATATACGCCGGCAAACAAT 27135 || | | || | |||||| ||| ||| Sbjct 77291 CAAAGACTCATTTTCGCCGGTAAATAAT 77264 >seq549 Length=112515 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || ||| | || || ||||| || ||| | || Sbjct 112123 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAGCCTCT 112064 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| || || ||||| ||||| Sbjct 112063 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 112004 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | |||||| || ||| | || || || || | ||||| |||||| Sbjct 112003 CAACGTTTAATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACTTTGTCCGACTACAAC 111944 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| ||| | ||| | ||| | ||| | || || || Sbjct 111943 ATCCAAAAGGAGTCAACCCTCCATCTCGTTCTTCGTCTCCGTGGAGG 111897 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| |||| || ||| | || || | ||||| || | || Sbjct 112348 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 112289 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||||||| ||| ||| || ||| | ||||| Sbjct 112288 GACACCATTGAGAACGTCAAGGCCAAGATTCAAGAC-AAGGAGGAATCCCA-CAGATCAG 112231 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||| || || | || || || || | || ||||||||| Sbjct 112230 CAAAGATTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGATTACAAC 112171 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | || |||||| || || | || |||||| | ||| Sbjct 112170 A-TCCAAAGGAATCCACTCTCCACTTGGTTCTCCGT 112136 >seq625 Length=33334924 Score = 131 bits (144), Expect = 1e-25 Identities = 179/249 (72%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 26966 TAAATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTAT 27025 |||||||| || ||| | | |||||| || || || || |||||||| || ||| |||| Sbjct 31078839 TAAATTTTGTATTTTTCA-GTCATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTAT 31078897 Query 27026 TACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAA 27085 ||| || ||||| || | ||||| | || |||| ||||| || || |||||||| Sbjct 31078898 TACCCTCGAAGTCGAGGCCTCCGATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAA 31078957 Query 27086 AGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAG 27145 ||||| || ||||| ||||| || | | || | |||||| || ||| | || || | Sbjct 31078958 GGAAGGAATTCCACCAGATCAGCAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGG 31079017 Query 27146 TTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || | ||||| |||||||| |||||||||||||| | || |||||| | ||| | Sbjct 31079018 ACGTACTCTCTCCGACTACAACATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGTCT 31079077 Query 27206 GCGGGGTGG 27214 || || || Sbjct 31079078 CCGTGGAGG 31079086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914784740800