Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq542 168 2e-36 seq549 159 8e-34 seq625 149 1e-30 >seq542 Length=114868 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||| || |||||||| || |||| ||||| | |||||| Sbjct 76469 AGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCC 76528 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || |||||||| | | ||| || || || || | |||||||||||| Sbjct 76529 TCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCT 76588 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||||||| ||| ||||| ||||| || ||| Sbjct 76589 TGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTC 76648 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| || || || || | ||||||| Sbjct 76649 TTTCCTGTGAGTGTTTTGACGAAGATCTGCATT 76681 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||||||||| || ||||| || || || | || || ||||| || Sbjct 76697 AGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCC 76756 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||| | || ||||| || || | ||| |||||||| Sbjct 76757 TCAAGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 76816 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||| ||||| ||||||||| || ||||| ||| Sbjct 76817 TGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATGGTC 76876 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| ||||| || || | ||||||| Sbjct 76877 TTTCCTGTGAGGGTCTTGACGAAGATCTGCATT 76909 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||||||||| || ||||| || || || | || || ||||||||| Sbjct 77428 AGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCT 77487 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || | || ||||| || || | |||||||||||| Sbjct 77488 TCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 77547 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||||||||| ||||| || ||||| || ||||| || Sbjct 77548 TGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTT 77607 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | || || || || | ||||| Sbjct 77608 TTTCCAGTCAACGTTTTGACGAAGATTTGCAT 77639 Score = 140 bits (154), Expect = 8e-28 Identities = 118/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || |||||||| | |||||| || ||||||| |||||||||||| |||||||| Sbjct 76309 CTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 76368 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| ||||||||||||||| ||| |||||||||||||| |||||||| || Sbjct 76369 GGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGAGTGATAGTCTTTCCGGT 76428 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| | || | |||||| Sbjct 76429 GAGGGTCTTAATGAAAATTTGCATT 76453 Score = 134 bits (148), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTC-TTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 || || | |||||||||||| || |||||||||||| || || | | || | ||||| Sbjct 76925 AGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATC 76984 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || |||||||| || |||||||| | | ||| || || || || | |||||||||||| Sbjct 76985 CTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTC 77044 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 || ||||| || ||||| || |||||||| || || || || | |||||||| Sbjct 77045 TTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAATGTGATCGT 77104 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| || || || || ||||| | ||||||| Sbjct 77105 CTTTCCGGTCAGGGTTTTGACAAAGATCTGCATT 77138 >seq549 Length=112515 Score = 159 bits (176), Expect = 8e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || || || ||||| ||||||||||| || || | | Sbjct 111899 TCCACGGAGACGAAGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAA 111958 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || || ||||| || |||||||| | ||||| || || || || | Sbjct 111959 AGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGGGAT 112018 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| || ||||| |||||||| || ||||| ||||||||||||||| ||||||||| Sbjct 112019 TCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAACCTC 112078 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| |||||||| ||||||||||| || || | ||||||| Sbjct 112079 AAGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCATT 112124 Score = 111 bits (122), Expect = 4e-19 Identities = 154/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||||| || ||| ||||||| ||||||| | || | ||||| Sbjct 112140 AGAACCAAGTGGAGAGTGGATTCCTTT-GGATGTTGTAATCCGACAAAGTGCGACCATCC 112198 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | | ||| || || | ||| |||| ||||||| Sbjct 112199 TCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGTGGGAT-TCCT-CCTTGTCT 112256 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || ||||||||||| || || || | ||||| ||| Sbjct 112257 TGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTC 112316 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||| || || || | |||||| Sbjct 112317 TTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 Score = 107 bits (118), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||||||||||| || || ||||| || || || | || Sbjct 112352 TCCACGAAGACGAAGAACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCAGAGAG 112411 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || ||||| || || |||||||| || |||||||| | | ||| ||||| || || | Sbjct 112412 AGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGAT 112471 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGT 211053 ||| |||||||| |||||||| || ||||| || ||||||| Sbjct 112472 TCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGT 112515 >seq625 Length=33334924 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| ||||| ||||| ||||||||||| || || | || Sbjct 31079084 TCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAG 31079025 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||| || || ||||| || |||||||| || | ||| || || || |||| Sbjct 31079024 AGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAAT 31078965 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| |||||||| || || || |||||||| || ||| || || || Sbjct 31078964 TCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTC 31078905 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| ||||| |||||||| || || | ||||| Sbjct 31078904 GAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 31078860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159142123662725