Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq542 87.8 1e-12 >seq542 Length=114868 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| | ||||| || | | Sbjct 76172 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAAGTCGAGGCTTCC 76113 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||||||| Sbjct 76112 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 76053 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || ||||| || ||||| || || | || || | ||| |||||| Sbjct 76052 CAACGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCCTTTCCGACTACAAC 75993 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || ||||| || | || || ||| | | ||| |||||||| Sbjct 75992 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTCCGTTTGAGAGGAGGA 75945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006860537820