Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq542 167 6e-36 seq625 149 1e-30 seq549 132 1e-25 seq550 95.1 3e-14 >seq542 Length=114868 Score = 167 bits (184), Expect = 6e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||||||||| || || |||| |||||| || | | |||||| |||||| Sbjct 77428 AGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCATCT 77487 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| |||| || ||||| || || || |||||||||||| Sbjct 77488 TCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 77547 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||| || || | ||||| || | ||||| || Sbjct 77548 TGGATCTTGGCCTTGACATTTTCGATGGTATCAGAAGCCTCCACCTCCAGGGTGATGGTT 77607 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||| | ||| | |||||| Sbjct 77608 TTTCCAGTCAACGTTTTGACGAAGATTTGCAT 77639 Score = 143 bits (158), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTC-TTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || || | ||| ||||||||||| |||||||| ||||| |||| |||||| | ||||| Sbjct 76925 AGAACCAAGTGAAGAGTGGATTCCTTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATC 76984 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || |||||||| | || ||| || || || || || ||||||||||| Sbjct 76985 CTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTC 77044 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| ||||| ||| || || |||||||| || | || || || || |||||||| Sbjct 77045 TTGAATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAATGTGATCGT 77104 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || |||| ||||| | || | |||||| Sbjct 77105 CTTTCCGGTCAGGGTTTTGACAAAGATCTGCATT 77138 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||||||||| || || |||| |||||| || | | |||||| || || Sbjct 76697 AGAACGAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTTCTTCCGTCC 76756 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||||| || ||||| || || || || ||||||||| Sbjct 76757 TCAAGCTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 76816 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || ||||| || || | ||| || || | ||||| ||| Sbjct 76817 TGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCAACCTCAAGGGTGATGGTC 76876 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | || || | ||| | |||||| Sbjct 76877 TTTCCTGTGAGGGTCTTGACGAAGATCTGCATT 76909 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || || || |||| ||||| |||| | || | ||||| Sbjct 75961 AGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGACCATCC 76020 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| | |||||||| || || || || || ||||||||| Sbjct 76021 TCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCT 76080 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || |||||||| || | || || || || ||||| ||| Sbjct 76081 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCGACTTCCAAGGTGATGGTC 76140 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 76141 TTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 76172 Score = 118 bits (130), Expect = 3e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| |||||||||| |||||| || || ||||| |||||||||||||||||||| Sbjct 76309 CTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 76368 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||||||||||| |||| ||| || || | ||||| ||||| || || Sbjct 76369 GGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGAGTGATAGTCTTTCCGGT 76428 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | || || ||||| | ||||||| Sbjct 76429 GAGGGTCTTAATGAAAATTTGCATT 76453 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || || || |||| ||||| || | | || | ||||| Sbjct 76469 AGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCC 76528 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| | || ||| || || || || || |||||||||||| Sbjct 76529 TCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCT 76588 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| |||| ||| || || | || || ||| Sbjct 76589 TGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGCTTCGACCTCAAGAGTAATGGTC 76648 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||||| | ||| | |||||| Sbjct 76649 TTTCCTGTGAGTGTTTTGACGAAGATCTGCATT 76681 >seq625 Length=33334924 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| || || ||||||| ||||| |||| | ||| | ||||| Sbjct 31079071 AGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCC 31079012 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| |||| ||| || || || ||||| |||||||||||| Sbjct 31079011 TCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCT 31078952 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||| || |||| || || || | || || ||| Sbjct 31078951 TGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTC 31078892 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||| ||| || | ||| | |||||| Sbjct 31078891 TTACCCGTCAGAGTCTTGACGAAGATTTGCAT 31078860 >seq549 Length=112515 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || || || ||||||| ||||| |||| |||||| | ||||| Sbjct 111912 AGAACGAGATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCC 111971 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| | ||||| || || || || || || || |||||| Sbjct 111972 TCGAGTTGCTTTCCGGCGAAGATTAAACGTTGCTGATCTGGTGGGATTCCCTCTTTGTCT 112031 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| ||| || || | ||||| ||| Sbjct 112032 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCAACCTCAAGGGTGATGGTC 112091 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| || | ||| | |||||| Sbjct 112092 TTTCCAGTGAGAGTCTTGACGAAGATCTGCATT 112124 Score = 132 bits (146), Expect = 1e-25 Identities = 158/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||||||||| ||| ||| |||||||| | |||||| | ||||| Sbjct 112140 AGAACCAAGTGGAGAGTGGATTCCTTT-GGATGTTGTAATCCGACAAAGTGCGACCATCC 112198 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || ||| || || | ||| | | ||||||||| Sbjct 112199 TCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGTGGGATTCC--TCCTTGTCT 112256 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || |||||||| || | || || || || ||||| ||| Sbjct 112257 TGAATCTTGGCCTTGACGTTCTCAATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTC 112316 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||| | ||| | ||||| Sbjct 112317 TTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 112348 Score = 111 bits (122), Expect = 4e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||||||||| || |||| |||||| || | | ||| Sbjct 112355 ACGAAGACGAAGAACCAAATGAAGAGTGGATTCCTTCTGGATATTGTAGTCAGAGAGAGT 112414 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || || || |||||||| || |||||||| | || ||| ||||| || || || || Sbjct 112415 TCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCC 112474 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 ||||||||||||||||| ||| || || ||||||| Sbjct 112475 CTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGT 112515 >seq550 Length=109190 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || || |||||||| ||||| ||||| ||| |||||| || ||| |||| |||| Sbjct 7620 TATGTCAAGCCTTGGTAAGGTTCTTCGCGTTGCATCGAATTAATCCGCATGCTCCGCCGC 7679 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGG-TG 7842 || | | | |||||| || |||||||||||| |||||||| |||| | | |||| | Sbjct 7680 TTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGG 7739 Query 7843 GAATATTTACGCGTTAGCT 7861 | | || | ||||||||| Sbjct 7740 GGAACTTAATGCGTTAGCT 7758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192521039261510