Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq626 86.0 5e-12 >seq626 Length=20921866 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || || || || || || |||||| || || ||||| || | ||| |||| || Sbjct 3164630 TACCAAATTCTCATTGACAATTCCGTCAGAAGCGGCGAAAAAGGCGAGAACTCGAGAGAT 3164571 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||||||||| || || || | || | ||| | | || ||| || | |||||| Sbjct 3164570 AAAGTACTGCTCATCGCCGTTCATCTTCTCCCAATCGTTCATATCCTTTCCAAGATCAAC 3164511 Query 5051 TTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT- 5109 |||||| |||||||||||||| || | || || || || | |||||||||| ||| Sbjct 3164510 TTCTTCGACAGTCCAAAACGAGGCGACAGCCTTCTTATAGAACTGCCAAATATCATGATG 3164451 Query 5110 ACTGAATCGGAAGTATGACAAATCTGTTGTC 5140 || | | |||| || ||||||| ||||| Sbjct 3164450 TCTCAGTGGGAA-AATCACAAATCGATTGTC 3164421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046138896445