Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq243 109 3e-19 >seq243 Length=1117 Score = 109 bits (120), Expect = 3e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 72058 CAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAG 72117 ||||| ||| ||| ||||| ||||||||| ||||| ||||| | || ||||| Sbjct 447 CAGTCGGGCGACTGGTCGGACGGCGAGGCGCTGTTCCTCGGCTGCCGCGCCTTCGGCGAG 388 Query 72118 CCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGC 72177 || || ||| || ||| |||||| ||||||||| ||| || ||||||||||| || Sbjct 387 TACGCGGACAACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGT 328 Query 72178 CTCAAGCAGCGCAGCTAC-GAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGA 72236 |||| |||||||||||| ||| || | || || | || || |||| ||||| Sbjct 327 CTCACCCAGCGCAGCTACACCGAC-AACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGA 269 Query 72237 GGTCGAGGAGATCGGCCCCGCACTGCG 72263 |||||| ||| |||||||| | || || Sbjct 268 GGTCGAAGAGGTCGGCCCCACGCTCCG 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297917585451500