Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_030901.1 Length=92618 Score E Sequences producing significant alignments: (Bits) Value seq243 114 8e-21 >seq243 Length=1117 Score = 114 bits (126), Expect = 8e-21 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 70995 CAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAG 71054 ||||| ||| ||| ||||| ||||||||| ||||| ||||| | || ||||| Sbjct 447 CAGTCGGGCGACTGGTCGGACGGCGAGGCGCTGTTCCTCGGCTGCCGCGCCTTCGGCGAG 388 Query 71055 CCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGC 71114 || || ||| || ||| |||||| ||||||||| ||| || ||||||||||| || Sbjct 387 TACGCGGACAACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGT 328 Query 71115 CTCAAGCAGCGCAGCTAC-GAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGA 71173 |||| |||||||||||| ||| || | || || | || || |||| ||||| Sbjct 327 CTCACCCAGCGCAGCTACACCGAC-AACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGA 269 Query 71174 GGTCGAGGAGATCGGCCCCGCGCTGCG 71200 |||||| ||| |||||||| |||| || Sbjct 268 GGTCGAAGAGGTCGGCCCCACGCTCCG 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296250398963635