Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20tropicalis_20[genbank_20GCA_5F000186765.1_202011- 01-31] 665 sequences; 79,321,433 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq243 138 7e-28 >seq243 Length=1117 Score = 138 bits (152), Expect = 7e-28 Identities = 237/339 (70%), Gaps = 9/339 (3%) Strand=Plus/Minus Query 69642 ATCACCGTCATCGGTAACCTGACCGCCGACCCCGAACTCCGGTTCACGCCCTCCGGT--G 69699 ||||||||| |||| |||||| ||||||||||||| || ||| | ||||| | Sbjct 555 ATCACCGTCGTCGGGAACCTGGTTGCCGACCCCGAACCGCGCGTCAGCCAGGCCGGTAAG 496 Query 69700 CCGCGGTCGCGAACTTCACCGTCGCGTCGACCCCGCG-GTACTTCGACAAGCAGTCGAAC 69758 | || | || ||| |||| ||||| ||||| || | |||| |||||| | Sbjct 495 TCCTGG--GTGACGTTCCGGATCGCCTCGACGCCGCGCGTGCG-CGACCGTCAGTCGGGC 439 Query 69759 GAGTGGAAGGATGCCGAGGCACTCTTCCTGCGCTGCAACGTCTGGCGCGAGTACGCCGAG 69818 || ||| ||| | |||||| || ||||| ||||| || || |||||||||| || Sbjct 438 GACTGGTCGGACGGCGAGGCGCTGTTCCTCGGCTGCCGCGCCTTCGGCGAGTACGCGGAC 379 Query 69819 AACGTGACTGAGTCGCTCCAGAAGGGCGCCCGCGTCATCGTCCAGGGCAAGCTCAAGCAG 69878 ||| | | | ||||||| |||||| | || || |||||||||||| |||| ||| Sbjct 378 AACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGTCTCACCCAG 319 Query 69879 CGGTCCTA---CGAGAAGGATGGCCAGCCGCGCACCACCTTCGAGCTCGAGGTTGAGGAG 69935 || ||| ||| || | || |||| ||||||| | |||| |||||||| || ||| Sbjct 318 CGCAGCTACACCGACAACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGAGGTCGAAGAG 259 Query 69936 ATCGGCCCCGCACTCCGGTACGCCACCGCCCGGGTCACC 69974 |||||||| | ||||| | ||| | ||| ||| ||| Sbjct 258 GTCGGCCCCACGCTCCGCTGGGCCTCGACCCAGGTGACC 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299319174091970